Genome Sequence of the Bacillus subtilis Biofilm-Forming Transformable Strain PS216

被引：14

作者：

Durrett, Russell ^{[1
]}

Mires, Mathieu ^{[2
,3
]}

Mirouze, Nicolas ^{[2
,4
]}

Narechania, Apurva ^{[5
]}

Mandic-Mulec, Ines ^{[6
]}

Dubnau, David ^{[2
,4
]}

机构：

[1] Cornell Univ, Weill Med Coll, Inst Comp Biomed, New York, NY 10021 USA

[2] Univ Med & Dent New Jersey, Publ Hlth Res Inst, Newark, NJ 07103 USA

[3] Univ Toulouse Toulouse III, Toulouse, France

[4] INRA, Domaine Vilvert, Micalis UMR1319, Jouy En Josas, France

[5] Amer Museum Nat Hist, Sackler Inst Comparat Genom, New York, NY 10024 USA

[6] Univ Ljubljana, Biotech Fac, Ljubljana, Slovenia

来源：

GENOME ANNOUNCEMENTS | 2013年 / 1卷 / 03期

关键词：

D O I：

10.1128/genomeA.00288-13

中图分类号：

学科分类号：

摘要：

Bacillus subtilis PS216, a strain isolated in Slovenia, has been sequenced. PS216 is transformable and forms robust biofilms, making it useful for the study of competence regulation in an undomesticated bacterium.

引用

页数：2

共 11 条

[1] ABACAS: algorithm-based automatic contiguation of assembled sequences [J].

Assefa, Samuel ;

Keane, Thomas M. ;

Otto, Thomas D. ;

Newbold, Chris ;

Berriman, Matthew .

BIOINFORMATICS, 2009, 25 (15) :1968-1969

[2] Hybrid error correction and de novo assembly of single-molecule sequencing reads [J].

Koren, Sergey ;

Schatz, Michael C. ;

Walenz, Brian P. ;

Martin, Jeffrey ;

Howard, Jason T. ;

Ganapathy, Ganeshkumar ;

Wang, Zhong ;

Rasko, David A. ;

McCombie, W. Richard ;

Jarvis, Erich D. ;

Phillippy, Adam M. .

NATURE BIOTECHNOLOGY, 2012, 30 (07) :692-+

[3] Versatile and open software for comparing large genomes [J].

Kurtz, S ;

Phillippy, A ;

Delcher, AL ;

Smoot, M ;

Shumway, M ;

Antonescu, C ;

Salzberg, SL .

GENOME BIOLOGY, 2004, 5 (02)

[4] Nucleotide sequence of the Bacillus subtilis temperate bacteriophage SPβc2 [J].

Lazarevic, V ;

Düsterhöft, A ;

Soldo, B ;

Hilbert, H ;

Mauël, C ;

Karamata, D .

MICROBIOLOGY-UK, 1999, 145 :1055-1067

[5] The Bacillus subtilis Conjugative Transposon ICEBs1 Mobilizes Plasmids Lacking Dedicated Mobilization Functions [J].

Lee, Catherine A. ;

Thomas, Jacob ;

Grossman, Alan D. .

JOURNAL OF BACTERIOLOGY, 2012, 194 (12) :3165-3172

[6] Fast and accurate short read alignment with Burrows-Wheeler transform [J].

Li, Heng ;

Durbin, Richard .

BIOINFORMATICS, 2009, 25 (14) :1754-1760

[7] Tracing the Domestication of a Biofilm-Forming Bacterium [J].

McLoon, Anna L. ;

Guttenplan, Sarah B. ;

Kearns, Daniel B. ;

Kolter, Roberto ;

Losick, Richard .

JOURNAL OF BACTERIOLOGY, 2011, 193 (08) :2027-2034

[8]

Sonenshein A.L., 2002, BACILLUS SUBTILIS IT

[9] The quorum sensing diversity within and between ecotypes of Bacillus subtilis [J].

Stefanic, Polonca ;

Decorosi, Francesca ;

Viti, Carlo ;

Petito, Janine ;

Cohan, Frederick M. ;

Mandic-Mulec, Ines .

ENVIRONMENTAL MICROBIOLOGY, 2012, 14 (06) :1378-1389

[10] Social Interactions and Distribution of Bacillus subtilis Pherotypes at Microscale [J].

Stefanic, Polonca ;

Mandic-Mulec, Ines .

JOURNAL OF BACTERIOLOGY, 2009, 191 (06) :1756-1764

← 1 2 →