The technology for flue gas desulfurization (FGD) with seawater is widely adopted by coal-fired power plants in coastal areas. SO2 in the flue gas is absorbed by alkaline seawater and transfered in aqueous phase as sulfite (SO32-), and most SO32- is transformed to sulfate (SO42-) after an aeration process. The remaining SO32- in the seawater discharged to sea area may be harmful to marine organism because of its biological toxicity, thus it is necessary to determine the concentration of SO32- in the seawater for desulfurization. In this study, the method of determination of SO32- in the seawater by ion chromatography was investigated. The separation was achieved on an IonPac AS14A column with 14 mmol/L NaOH- 12 mmol/L Na2CO3 solution as the mobile phase at a flow rate of 1.2 mL/min, and the detection was performed by a pulsed amperometric detector. Formaldehyde was added as a protective agent when sampling because the SO32- is easy to be oxidized. To avoid the formation of Mg(OH)(2) in the mobile phase with high pH value which might block the column, the Mg2+ in seawater was precipitated by NaOH solution (pH 12. 0) before sample determination. The method showed good linearity within the range of 0 - 100 mg/L with an average recovery of 116. 8%. The method detection limit (MDL) reached as low as 0.05 mg/L. The relative standard deviations (RSD) for seawater matrix samples spiked at levels of 7. 5, 25. 0 and 75. 0 mg/L were 2. 1%, 3. 1% and 4. 0% (n =9) , respectively. The method has been applied for the determination of SO32- in flue gas desulfurization seawater with the advantages of being fast, sensitive and selective.