First Complete Genome Sequence of a Salmonella enterica subsp. enterica Serovar Derby Strain Associated with Pork in France

被引：6
作者：
Kerouanton, Annaelle [1 ,3 ]
Hirchaud, Edouard [2 ,3 ]
Rose, Valerie [1 ,3 ]
Esnault, Emilie [1 ,3 ]
Naquin, Delphine [4 ]
Denis, Martine [1 ,3 ]
机构：
[1] Anses, Hyg & Qual Poultry & Pig Prod Unit, BP53,Site Croix, Ploufragan, France
[2] Anses, Viral Genet & Biosafety Unit, BP53,Site Croix, Ploufragan, France
[3] European Univ Brittany, Rennes, France
[4] Univ Paris Sud, CNRS, CEA, Inst Integrat Biol Cell I2BC, Gif Sur Yvette, France
来源：
GENOME ANNOUNCEMENTS | 2015年 / 3卷 / 04期
关键词：
D O I：
10.1128/genomeA.00853-15
中图分类号：
学科分类号：
摘要：
In France, Salmonella enterica subsp. enterica serovar Derby is one of the most often isolated serovars in pigs. Here, we describe the draft genome sequence of a strain isolated from a pig. This strain had the most frequent pulsed-field gel electrophoresis (PFGE) and antimicrobial patterns (S, SSU, T) usually observed in pig production in France. Those patterns have been also highlighted in human isolates.
引用
收藏
页数：2
相关论文
共 11 条
[1]   The European Union summary report on trends and sources of zoonoses, zoonotic agents and food-borne outbreaks in 2013 [J].
Boelaert, Frank ;
Rizzi, Valentina ;
Amore, Giusi ;
Stoicescu, Anca ;
Riolo, Francesca ;
Nagy, Krisztina ;
Pinacho, Cristina Rodriguez ;
Kleine, Johanna ;
Westrell, Therese ;
Warns-Petit, Eva ;
Dias, Joana Gomes ;
Koedmoen, Csaba ;
Takkinen, Johanna .
EFSA JOURNAL, 2015, 13 (01)
[2]   Phenotypic and molecular typing of Salmonella strains reveals different contamination sources in two commercial pig slaughterhouses [J].
Botteldoorn, N ;
Herman, L ;
Rijpens, N ;
Heyndrickx, M .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2004, 70 (09) :5305-5314
[3]   Outbreak of Salmonella enterica Serotype Montevideo Infections in France Linked to Consumption of Cheese Made from Raw Milk [J].
Dominguez, Morgane ;
Jourdan-Da Silva, Nathalie ;
Vaillant, Veronique ;
Pihier, Nathalie ;
Kermin, Cecile ;
Weill, Francois-Xavier ;
Delmas, Gilles ;
Kerouanton, Annaelle ;
Brisabois, Anne ;
de Valk, Henriette .
FOODBORNE PATHOGENS AND DISEASE, 2009, 6 (01) :121-128
[4]   Full-length transcriptome assembly from RNA-Seq data without a reference genome [J].
Grabherr, Manfred G. ;
Haas, Brian J. ;
Yassour, Moran ;
Levin, Joshua Z. ;
Thompson, Dawn A. ;
Amit, Ido ;
Adiconis, Xian ;
Fan, Lin ;
Raychowdhury, Raktima ;
Zeng, Qiandong ;
Chen, Zehua ;
Mauceli, Evan ;
Hacohen, Nir ;
Gnirke, Andreas ;
Rhind, Nicholas ;
di Palma, Federica ;
Birren, Bruce W. ;
Nusbaum, Chad ;
Lindblad-Toh, Kerstin ;
Friedman, Nir ;
Regev, Aviv .
NATURE BIOTECHNOLOGY, 2011, 29 (07) :644-U130
[5]   Pulsed-field gel electrophoresis subtyping database for foodborne Salmonella enterica serotype discrimination [J].
Kerouanton, Annaelle ;
Marault, Muriel ;
Lailler, Renaud ;
Weill, Francois-Xavier ;
Feurer, Carole ;
Espie, Emmanuelle ;
Brisabois, Anne .
FOODBORNE PATHOGENS AND DISEASE, 2007, 4 (03) :293-303
[6]   Genetic Diversity and Antimicrobial Resistance Profiles of Salmonella enterica Serotype Derby Isolated from Pigs, Pork, and Humans in France [J].
Kerouanton, Annaelle ;
Rose, Valerie ;
Weill, Francois-Xavier ;
Granier, Sophie A. ;
Denis, Martine .
FOODBORNE PATHOGENS AND DISEASE, 2013, 10 (11) :977-984
[7]  
Noel H, 2006, Euro Surveill, V11, P9, DOI 10.2807/esm.11.11.00660-en
[8]   Quality control and preprocessing of metagenomic datasets [J].
Schmieder, Robert ;
Edwards, Robert .
BIOINFORMATICS, 2011, 27 (06) :863-864
[9]   Prokka: rapid prokaryotic genome annotation [J].
Seemann, Torsten .
BIOINFORMATICS, 2014, 30 (14) :2068-2069
[10]   Unveiling contamination sources and dissemination routes of Salmonella sp in pigs at a Portuguese slaughterhouse through macrorestriction profiling by pulsed-field gel electrophoresis [J].
Vieira-Pinto, Madalena ;
Tenreiro, Rogerio ;
Martins, Conceicao .
INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY, 2006, 110 (01) :77-84
12