INCREASED RELIABILITY OF SELECTIVE PCR BY USING ADDITIONALLY MUTATED PRIMERS AND A COMMERCIAL TAQ DNA-POLYMERASE ENHANCER

被引:7
作者
DEMILITO, A [1 ]
CATUCCI, M [1 ]
IANNELLI, F [1 ]
ROMANO, L [1 ]
ZAZZI, M [1 ]
VALENSIN, PE [1 ]
机构
[1] UNIV SIENA,DIPARTIMENTO BIOL MOLEC,SEZ MICROBIOL,I-53100 SIENA,ITALY
关键词
SELECTIVE POLYMERASE CHAIN REACTION; HUMAN IMMUNODEFICIENCY VIRUS; REVERSE TRANSCRIPTASE; MUTATION;
D O I
10.1007/BF02789112
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A reliable selective PCR procedure that combines the use of additionally mutated primers with the specificity-enhancing properties of a commercial preparation (Perfect Match, Stratagene) is described. The human immunodeficiency virus type 1 pol gene point mutations known to confer in vitro resistance to azidothymidine were examined as a model for optimization of the assay. The usual strategy of deliberately introducing an additional mismatch 1 residue from the 3' end in the wild-type and mutant primers did not allow reproducible discrimination between wild-type and mutant target sequences. Addition of minimal amounts of Perfect Match to the same PCR mixtures resulted in a significantly enlarged range of selective annealing temperatures, providing a valuable and cost-effective means for reliable detection of known mutations by selective PCR.
引用
收藏
页码:166 / 169
页数:4
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共 8 条
  • [1] Newton C.R., Graham A., Heptinstall L.E., Powell S.J., Summers C., Kalsheker N., Smith J.C., Markham A.F., Analysis of any point mutation in DNA. The amplification refractory mutation system (ARMS), Nucleic Acids Res., 17, pp. 2503-2516, (1989)
  • [2] Kwok S., Kellogg D.E., McKinney N., Spasic D., Goda L., Levenson C., Sninsky J.J., Effects of primer-template mismatches on the polymerase chain reaction: human immunodeficiency virus type 1 model studies, Nucleic Acids Res., 18, pp. 999-1005, (1990)
  • [3] Larder B.A., Kellam P., Kemp S.D., Zidovudine resistance predicted by direct detection of mutations in DNA from HIV-infected lymphocytes, AIDS, 5, pp. 137-144, (1991)
  • [4] Larder B.A., Kemp S.D., Multiple mutations in HIV-1 reverse transcriptase confer high-level resistance to zidovudine (AZT), Science, 246, pp. 1155-1158, (1989)
  • [5] Hart C., Chang S.-Y., Kwok S., Sninsky J.J., Ou C.-Y., Schochetman G., A replication-deficient HIV-I DNA used for quantitation of the polymerase chain reaction (PCR), Nucleic Acids Res., 18, (1990)
  • [6] Zazzi M., Romano L., Brasini A., Valensin P.E., Simultaneous amplification of multiple human immunodeficiency virus type 1 DNA sequences from clinical specimen by using nested-primer polymerase chain reaction, AIDS Res. Hum. Retroviruses, 9, pp. 315-320, (1993)
  • [7] Kellam P., Boucher C.A.B., Larder B.A., Fifth mutation in human immunodeficiency virus type 1 reverse transcriptase contributes to the development of high-level resistance to zidovudine, Proc. Natl. Acad. Sci. USA, 89, pp. 1934-1938, (1992)
  • [8] Major J.G., A rapid PCR method of screening for small mutations, Biotechniques, 12, pp. 40-43, (1992)