Draft genome of Haloarcula rubripromontorii strain SL3, a novel halophilic archaeon isolated from the solar salterns of Cabo Rojo, Puerto Rico

被引:4
作者
Sanchez-Nieves, Ruben [1 ]
Facciotti, Marc [2 ]
Saavedra-Collado, Sofia [1 ]
Davila-Santiago, Lizbeth [1 ]
Rodriguez-Carrero, Roy [1 ]
Montalvo-Rodriguez, Rafael [1 ]
机构
[1] Univ Puerto Rico, Dept Biol, Box 9000, Mayaguez, PR 00681 USA
[2] Biomed Engn & Genome Ctr, 451 Hlth Sci Dr, Davis, CA 95618 USA
关键词
Halophilic archaea; Henome sequence; Puerto Rico;
D O I
10.1016/j.gdata.2016.02.005
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The genus Haloarcula belongs to the family Halobacteriaceae which currently has 10 valid species. Here we report the draft genome sequence of strain SL3, a newspecies within this genus, isolated fromthe Solar Salterns of Cabo Rojo, Puerto Rico. Genome assembly performed using NGEN Assembler resulted in 18 contigs (N50 = 601,911 bp), the largest of which contains 1,023,775 bp. The genome consists of 3.97 MB and has a GC content of 61.97%. Like all species of Haloarcula, the genomeencodes heterogeneous copies of the small subunit ribosomal RNA. In addition, the genome includes 6 rRNAs, 48 tRNAs, and 3797 protein coding sequences. Several carbohydrate-active enzymes genes were found, as well as enzymes involved in the dihydroxyacetone processing pathway which are not found in other Haloarcula species. The NCBI accession number for this genome is LIUF00000000 and the strain deposit number is CECT9001. (C) 2016 The Authors. Published by Elsevier Inc.
引用
收藏
页码:287 / 289
页数:3
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