Genome Sequences of 28 Bordetella pertussis U.S. Outbreak Strains Dating from 2010 to 2012

被引：10

作者：

Harvill, Eric T. ^{[1
]}

Goodfield, Laura L. ^{[1
]}

Ivanov, Yury ^{[1
]}

Meyer, Jessica A. ^{[1
]}

Newth, Christopher ^{[2
]}

Cassiday, Pamela ^{[3
]}

Tondella, Maria Lucia ^{[3
]}

Liao, Patty ^{[2
]}

Zimmerman, Jerry ^{[2
]}

Meert, Kathleen ^{[2
]}

Wessel, David ^{[2
]}

Berger, John ^{[2
]}

Dean, J. Michael ^{[2
,4
]}

Holubkov, Richard ^{[2
,4
]}

Burr, Jeri ^{[2
,4
]}

Liu, Teresa ^{[2
,4
]}

Brinkac, Lauren ^{[5
]}

Kim, Maria ^{[5
]}

Losada, Liliana ^{[5
]}

机构：

[1] Penn State Univ, University Pk, PA 16802 USA

[2] NICHD, Collaborat Pediat Crit Care Res Network, Salt Lake City, UT USA

[3] Ctr Dis Control & Prevent, Atlanta, GA USA

[4] Univ Utah, Data Coordinating Ctr, Salt Lake City, UT USA

[5] J Craig Venter Inst, Rockville, MD 20850 USA

来源：

GENOME ANNOUNCEMENTS | 2013年 / 1卷 / 06期

基金：

美国国家卫生研究院;

关键词：

D O I：

10.1128/genomeA.01075-13

中图分类号：

学科分类号：

摘要：

Despite the availability of highly effective vaccines, Bordetella pertussis incidence has been rapidly rising in highly vaccinated populations. Recent outbreaks have received media attention, feeding concerns about the emergence of dangerous new strains with increased virulence or that escape vaccine-induced immunity. To accelerate the study of this reemerging pathogen, we sequenced the genomes of 28 B. pertussis strains isolated during outbreaks from 2010 through 2012, making both strains and sequence data available to the scientific community.

引用

页数：2

共 4 条

[1]

CDC, 2013, MMWR-MORBID MORTAL W, V61, P719

[2]

CHOMCZYNSKI P, 1987, ANAL BIOCHEM, V162, P156, DOI 10.1016/0003-2697(87)90021-2

[3] Aggressive assembly of pyrosequencing reads with mates [J].

Miller, Jason R. ;

Delcher, Arthur L. ;

Koren, Sergey ;

Venter, Eli ;

Walenz, Brian P. ;

Brownley, Anushka ;

Johnson, Justin ;

Li, Kelvin ;

Mobarry, Clark ;

Sutton, Granger .

BIOINFORMATICS, 2008, 24 (24) :2818-2824

[4] Velvet: Algorithms for de novo short read assembly using de Bruijn graphs [J].

Zerbino, Daniel R. ;

Birney, Ewan .

GENOME RESEARCH, 2008, 18 (05) :821-829

← 1 →