A MOLECULAR CLIP THAT BINDS AROMATIC GUESTS BY AN INDUCED-FIT MECHANISM

被引:56
|
作者
SIJBESMA, RP
WIJMENGA, SS
NOLTE, RJM
机构
[1] CATHOLIC UNIV NIJMEGEN,NSR CTR,DEPT ORGAN CHEM,6525 ED NIJMEGEN,NETHERLANDS
[2] CATHOLIC UNIV NIJMEGEN,NSR CTR,NATL HF NMR FACIL,6525 ED NIJMEGEN,NETHERLANDS
关键词
D O I
10.1021/ja00051a013
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The conformational behavior and binding properties of a novel molecular receptor consisting of a diphenylglycoluril unit flanked by two 2,7-disubstituted naphthalene rings is described. The molecule appears in three conformations. These conformations differ in the way that the naphthalene rings are oriented with respect to the two phenyl groups on the concave side of the glycoluril moiety, viz. anti-anti, syn-anti, and syn-syn. The receptor is able to change from one conformation to another by flipping the naphthalene walls. The mechanism and the rate constants for this process were determined by 2D EXSY NMR techniques. One of the three conformations contains a cavity, within which aromatic guest molecules of appropriate size can be bound selectively.
引用
收藏
页码:9807 / 9813
页数:7
相关论文
共 50 条
  • [21] A novel induced-fit reaction mechanism of asymmetric hot dog thioesterase PaaI
    Kunishima, N
    Asada, Y
    Sugahara, M
    Ishijima, J
    Nodake, Y
    Sugahara, M
    Miyano, M
    Kuramitsu, S
    Yokoyama, S
    Sugahara, M
    JOURNAL OF MOLECULAR BIOLOGY, 2005, 352 (01) : 212 - 228
  • [22] MloK1 Ligand Binding Simulations Indicate an Induced-Fit Mechanism
    Voss, Bela
    Peuker, Sebastian
    Kaupp, U. Benjamin
    Grubmueller, Helmut
    BIOPHYSICAL JOURNAL, 2012, 102 (03) : 410A - 410A
  • [23] An induced-fit mechanism for substrate entry and enzyme catalysis in prolyl endopeptidase.
    Chiu, Thang K.
    Li, Min
    Davies, David R.
    BIOPHYSICAL JOURNAL, 2007, : 385A - 385A
  • [24] Silico studies of DNA pol X support an induced-fit mechanism.
    Benitez, BAS
    Arora, K
    Schlick, T
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2005, 229 : U769 - U769
  • [25] Observing an induced-fit mechanism during sequence-specific DNA methylation
    Estabrook, R. August
    Reich, Norbert
    JOURNAL OF BIOLOGICAL CHEMISTRY, 2006, 281 (48) : 37205 - 37214
  • [26] Induced-Fit Binding of π-Electron-Donor Substrates to Macrocyclic Aromatic Ether Imide Sulfones: A Versatile Approach to Molecular Assembly
    Colquhoun, Howard M.
    Zhu, Zhixue
    Williams, David J.
    Drew, Michael G. B.
    Cardin, Christine J.
    Gan, Yu
    Crawford, Andrew G.
    Marder, Todd B.
    CHEMISTRY-A EUROPEAN JOURNAL, 2010, 16 (03) : 907 - 918
  • [27] Molecular dynamics simulations indicate an induced-fit mechanism for LSD1/CoREST-H3-histone molecular recognition
    Vellore, Nadeem A.
    Baron, Riccardo
    BMC BIOPHYSICS, 2013, 6
  • [28] FiberDock: a web server for flexible induced-fit backbone refinement in molecular docking
    Mashiach, Efrat
    Nussinov, Ruth
    Wolfson, Haim J.
    NUCLEIC ACIDS RESEARCH, 2010, 38 : W457 - W461
  • [29] Molecular characterization of a family 5 glycoside hydrolase suggests an induced-fit enzymatic mechanism (vol 6, 23473, 2016)
    Liberato, Marcelo V.
    Silveira, Rodrigo L.
    Prates, Erica T.
    de Araujo, Evandro A.
    Pellegrini, Vanessa O. A.
    Camilo, Cesar M.
    Kadowaki, Marco A.
    Neto, Mario de O.
    Popov, Alexander
    Skaf, Munir S.
    Polikarpov, Igor
    SCIENTIFIC REPORTS, 2016, 6
  • [30] Charge Optimization Theory for Induced-Fit Ligands
    Shen, Yang
    Gilson, Michael K.
    Tidor, Bruce
    JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2012, 8 (11) : 4580 - 4592