THE POLYPEPTIDE-CHAIN FOLD IN TYROSINE PHENOL-LYASE, A PYRIDOXAL-5'-PHOSPHATE-DEPENDENT ENZYME

被引:12
|
作者
ANTSON, AA
STROKOPYTOV, BV
MURSHUDOV, GN
ISUPOV, MN
HARUTYUNYAN, EH
DEMIDKINA, TV
VASSYLYEV, DG
DAUTER, Z
TERRY, H
WILSON, KS
机构
[1] ACAD SCI USSR,INST CRYSTALLOG,MOSCOW 117333,USSR
[2] ENGELHARDT MOLEC BIOL INST,MOSCOW 117984,USSR
关键词
TYROSINE PHENOL LYASE; X-RAY ANALYSIS; POLYPEPTIDE CHAIN FOLD; BACTERIAL;
D O I
10.1016/0014-5793(92)80454-O
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The tyrosine phenol lyase (EC 4.1.99.2) from Citrobacter intermedius has been crystallised in the apo form by vapour diffusion. The space group is P2(1)2(1)2. The unit cell has dimensions a = 76.0 angstrom, b = 138.3 angstrom, c = 93.5 angstrom and it contains two subunits of the tetrameric molecule in the asymmetric unit. Diffraction data for the native enzyme and two heavy atom derivatives have been collected with synchrotron radiation and an image plate scanner. The structure has been solved at 2.7 angstrom resolution by isomorphous replacement with subsequent modification of the phases by averaging the density around the non-crystallographic symmetry axis. The electron density maps clearly show the relative orientation of the subunits and most of the trace of the polypeptide chain. Each subunit consists of two domains. The topology of the large domain appears to be similar to that of the aminotransferases.
引用
收藏
页码:256 / 260
页数:5
相关论文
共 50 条
  • [21] A periplasmic, pyridoxal-5′-phosphate-dependent amino acid racemase in Pseudomonas taetrolens
    Daisuke Matsui
    Tadao Oikawa
    Noriaki Arakawa
    Shintaro Osumi
    Frank Lausberg
    Norma Stäbler
    Roland Freudl
    Lothar Eggeling
    Applied Microbiology and Biotechnology, 2009, 83 : 1045 - 1054
  • [22] The structural basis of pyridoxal-5′-phosphate-dependent β-NAD-alkylating enzymes
    Awakawa, Takayoshi
    Mori, Takahiro
    Barra, Lena
    Ahmed, Yusef
    Ushimaru, Richiro
    Gao, Yaojie
    Adachi, Naruhiko
    Senda, Toshiya
    Terada, Tohru
    Tantillo, Dean J.
    Abe, Ikuro
    NATURE CATALYSIS, 2024, 7 (10): : 1099 - 1108
  • [23] A periplasmic, pyridoxal-5'-phosphate-dependent amino acid racemase in Pseudomonas taetrolens
    Matsui, Daisuke
    Oikawa, Tadao
    Arakawa, Noriaki
    Osumi, Shintaro
    Lausberg, Frank
    Staebler, Norma
    Freudl, Roland
    Eggeling, Lothar
    APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 2009, 83 (06) : 1045 - 1054
  • [24] Hyperconjugation Promotes Catalysis in a Pyridoxal 5′-Phosphate-Dependent Enzyme
    Dajnowicz, Steven
    Parks, Jerry M.
    Hu, Xiche
    Johnston, Ryne C.
    Kovalevsky, Andrey Y.
    Mueser, Timothy C.
    ACS CATALYSIS, 2018, 8 (07): : 6733 - 6737
  • [25] MULTIPLE EVOLUTIONARY ORIGIN OF PYRIDOXAL-5'-PHOSPHATE-DEPENDENT AMINO-ACID DECARBOXYLASES
    SANDMEIER, E
    HALE, TI
    CHRISTEN, P
    EUROPEAN JOURNAL OF BIOCHEMISTRY, 1994, 221 (03): : 997 - 1002
  • [26] Crystal structure of the pyridoxal-5′-phosphate-dependent serine dehydratase from human liver
    Sun, L
    Bartlam, M
    Liu, YW
    Pang, H
    Rao, ZH
    PROTEIN SCIENCE, 2005, 14 (03) : 791 - 798
  • [27] Stereo specificity of α-proton exchange reactions catalysed by pyridoxal-5′-phosphate-dependent enzymes
    Malthouse, JPG
    BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS, 2003, 1647 (1-2): : 138 - 142
  • [28] Molecular characterization of novel pyridoxal-5′-phosphate-dependent enzymes from the human microbiome
    Fleischman, Nicholas M.
    Das, Debanu
    Kumar, Abhinav
    Xu, Qingping
    Chiu, Hsiu-Ju
    Jaroszewski, Lukasz
    Knuth, Mark W.
    Klock, Heath E.
    Miller, Mitchell D.
    Elsliger, Marc-Andre
    Godzik, Adam
    Lesley, Scott A.
    Deacon, Ashley M.
    Wilson, Ian A.
    Toney, Michael D.
    PROTEIN SCIENCE, 2014, 23 (08) : 1060 - 1076
  • [29] From cofactor to enzymes.: The molecular evolution of pyridoxal-5′-phosphate-dependent enzymes
    Christen, P
    Mehta, PK
    CHEMICAL RECORD, 2001, 1 (06): : 436 - 447
  • [30] 3-INDOLEACETALDOXIME HYDRO-LYASE - A PYRIDOXAL-5'-PHOSPHATE ACTIVATED ENZYME
    KUMAR, SA
    MAHADEVAN, S
    ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, 1963, 103 (03) : 516 - &