PREDICTION OF CHROMATOGRAPHIC RETENTION VALUES (R(M)) AND PARTITION-COEFFICIENTS (LOG P-OCT) USING A COMBINATION OF SEMIEMPIRICAL SELF-CONSISTENT REACTION FIELD CALCULATIONS AND NEURAL NETWORKS

被引:24
作者
GRUNENBERG, J [1 ]
HERGES, R [1 ]
机构
[1] UNIV ERLANGEN NURNBERG,INST ORGAN CHEM,D-91054 ERLANGEN,GERMANY
来源
JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES | 1995年 / 35卷 / 05期
关键词
D O I
10.1021/ci00027a018
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
A combination of semiempirical solvent effect calculations and artificial neural networks was used to predict the (reversed phase) retention values (R(M)) of steroids and the partition coefficients (log P-oct) of a diverse set of organic compounds. Eleven selected physical parameters from AM1 self-consistent reaction field calculations were used as input for neural networks of the back-propagation type. The performance (standard error 0.08 R(M) units) in predicting retention values of a set of steroids is close to experimental accuracy (0.03 R(M) units). The partition coefficients of a heterogeneous set of organic compounds are predicted with a standard error of 0.29 log P-oct units. Systematic leave-n-out experiments revealed that the solvation energy obtained by simple solvent calculations (spherical model) is the most important parameter in our 11 parameter set and considerably improves the performance in predicting hydrophobicity at little additional computational cost.
引用
收藏
页码:905 / 911
页数:7
相关论文
共 38 条
[1]   CONFORMATIONAL-ANALYSIS .130. MM2 - HYDROCARBON FORCE-FIELD UTILIZING V1 AND V2 TORSIONAL TERMS [J].
ALLINGER, NL .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1977, 99 (25) :8127-8134
[2]   MOLECULAR MECHANICS - THE MM3 FORCE-FIELD FOR HYDROCARBONS .1. [J].
ALLINGER, NL ;
YUH, YH ;
LII, JH .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1989, 111 (23) :8551-8566
[3]   NEURAL NETWORKS AS NONLINEAR STRUCTURE ACTIVITY RELATIONSHIP ANALYZERS - USEFUL FUNCTIONS OF THE PARTIAL DERIVATIVE METHOD IN MULTILAYER NEURAL NETWORKS [J].
AOYAMA, T ;
ICHIKAWA, H .
JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES, 1992, 32 (05) :492-500
[4]   NEURAL NETWORK STUDIES .1. ESTIMATION OF THE AQUEOUS SOLUBILITY OF ORGANIC-COMPOUNDS [J].
BODOR, N ;
HARGET, A ;
HUANG, MJ .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1991, 113 (25) :9480-9483
[5]  
BODOR N, 1992, J PHARM SCI, V81, P372
[6]   OCTANOL WATER PARTITION-COEFFICIENTS EXPRESSED IN TERMS OF SOLUTE MOLECULAR-SURFACE AREAS AND ELECTROSTATIC POTENTIALS [J].
BRINCK, T ;
MURRAY, JS ;
POLITZER, P .
JOURNAL OF ORGANIC CHEMISTRY, 1993, 58 (25) :7070-7073
[7]   MAPPING ANALYTIC-FUNCTIONS USING NEURAL NETWORKS [J].
BURDEN, FR .
JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES, 1994, 34 (06) :1229-1231
[8]   THE DEVELOPMENT AND USE OF QUANTUM-MECHANICAL MOLECULAR-MODELS .76. AM1 - A NEW GENERAL-PURPOSE QUANTUM-MECHANICAL MOLECULAR-MODEL [J].
DEWAR, MJS ;
ZOEBISCH, EG ;
HEALY, EF ;
STEWART, JJP .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1985, 107 (13) :3902-3909
[9]   REVERSED-PHASE THIN-LAYER CHROMATOGRAPHY OF STEROIDS .1. MEASUREMENT AND INTERPRETATION OF RM-VALUES [J].
DRAFFEHN, J ;
SCHONECKER, B ;
PONSOLD, K .
JOURNAL OF CHROMATOGRAPHY, 1981, 205 (01) :113-124
[10]  
FAMINI GR, 1992, J PHYS ORG CHEM, V5, P3395