Complete Genome Sequence of Human Coronavirus OC43 Isolated from Mexico

被引：2

作者：

Taboada, B. T. ^{[1
]}

Isa, P. ^{[1
]}

Espinoza, M. A. ^{[1
]}

Aponte, F. E. ^{[1
]}

Arias-Ortiz, M. A. ^{[2
]}

Monge-Martinez, J. ^{[2
]}

Rodriguez-Vazquez, R. ^{[2
]}

Diaz-Hernandez, F. ^{[2
]}

Zarate-Vidal, F. ^{[2
]}

Wong-Chew, R. M. ^{[3
]}

Firo-Reyes, V. ^{[4
]}

del Rio-Almendarez, C. N. ^{[5
]}

Gaitan-Meza, J. ^{[6
]}

Villasenor-Sierra, A. ^{[7
]}

Martinez-Aguilar, G. ^{[8
]}

Garcia-Borjas, M. ^{[8
]}

Noyola, D. E. ^{[1
]}

Perez-Gonzalez, L. F. ^{[9
]}

Lopez, S. ^{[1
]}

Santos-Preciado, J. I. ^{[3
]}

Arias, C. F. ^{[1
]}

机构：

[1] Univ Nacl Autonoma Mexico, Inst Biotecnol, Cuernavaca, Morelos, Mexico

[2] Colegio Pediat Estado Veracruz, Xalapa, Veracruz, Mexico

[3] Univ Nacl Autonoma Mexico, Fac Med, Mexico City, DF, Mexico

[4] Hosp Gen Mexico City, Mexico City, DF, Mexico

[5] Hosp Pediat Coyoacan, Mexico City, DF, Mexico

[6] Nuevo Hosp Civil Guadalajara Dr Juan I Menchaca, Guadalajara, Jalisco, Mexico

[7] IMSS, Ctr Invest Biomed Occidente, Guadalajara, Jalisco, Mexico

[8] Hosp Gen Durango, Durango, Mexico

[9] Hosp Cent Dr Ignacio Morones Prieto, San Luis Potosi, Mexico

来源：

GENOME ANNOUNCEMENTS | 2016年 / 4卷 / 06期

关键词：

D O I：

10.1128/genomeA.01256-16

中图分类号：

学科分类号：

摘要：

We report the complete genome sequence of the first Mexican human coronavirus (HCoV) OC43, obtained by new-generation sequencing and a metagenomic approach, isolated from a child hospitalized with pneumonia. The genome is closely related to the other OC43 genome sequences available, ranging from 99.8% to 98.2% nucleotide sequence identity.

引用

页数：2

共 7 条

[1] Coronavirus-related nosocomial viral respiratory infections in a neonatal and paediatric intensive care unit: a prospective study [J].

Gagneur, A ;

Sizun, J ;

Vallet, S ;

Legrand, MC ;

Picard, B ;

Talbot, PJ .

JOURNAL OF HOSPITAL INFECTION, 2002, 51 (01) :59-64

[2] Reverse genetics of the largest RNA viruses [J].

Masters, PS .

ADVANCES IN VIRUS RESEARCH, VOL 53, 1999, 53 :245-264

[3] HUMAN CORONAVIRUSES - A BRIEF REVIEW [J].

MYINT, SH .

REVIEWS IN MEDICAL VIROLOGY, 1994, 4 (01) :35-46

[4] Is There Still Room for Novel Viral Pathogens in Pediatric Respiratory Tract Infections? [J].

Taboada, Blanca ;

Espinoza, Marco A. ;

Isa, Pavel ;

Aponte, Fernando E. ;

Arias-Ortiz, Maria A. ;

Monge-Martinez, Jesus ;

Rodriguez-Vazquez, Ruben ;

Diaz-Hernandez, Fidel ;

Zarate-Vidal, Fernando ;

Maria Wong-Chew, Rosa ;

Firo-Reyes, Veronica ;

del Rio-Almendarez, Carlos N. ;

Gaitan-Meza, Jesus ;

Villasenor-Sierra, Alberto ;

Martinez-Aguilar, Gerardo ;

Salas-Mier, Ma. del Carmen ;

Noyola, Daniel E. ;

Perez-Gonzalez, Luis F. ;

Lopez, Susana ;

Santos-Preciado, Jose I. ;

Arias, Carlos F. .

PLOS ONE, 2014, 9 (11)

[5] An outbreak of coronavirus OC43 respiratory infection in Normandy, France [J].

Vabret, A ;

Mourez, T ;

Gouarin, S ;

Petitjean, J ;

Freymuth, F .

CLINICAL INFECTIOUS DISEASES, 2003, 36 (08) :985-989

[6]

Wellcome Trust Sanger Institute, 2012, SMALT

[7] Velvet: Algorithms for de novo short read assembly using de Bruijn graphs [J].

Zerbino, Daniel R. ;

Birney, Ewan .

GENOME RESEARCH, 2008, 18 (05) :821-829

← 1 →