SEQUENCEEDITINGALIGNER - A MULTIPLE SEQUENCE EDITOR AND ALIGNER

被引:8
作者
BARBER, AM
MAIZEL, JV
机构
[1] Laboratory of Mathematical Biology, National Cancer Institute, Frederick, MD
来源
GENETIC ANALYSIS-BIOMOLECULAR ENGINEERING | 1990年 / 7卷 / 02期
关键词
D O I
10.1016/0735-0651(90)90011-4
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Here we present the SequencesEditingAligner system for editing multiple, aligned genetic sequences. This is an interactive multi-window color system that displays more than 3500 nucleotides or amino acids. The system handles nucleic acid or protein sequences with or without secondary structure data. More than 300 sequences, each more than 1500 elements in length, may be analyzed together. With the system scientists can classify elements, align sequences, edit them, fund consensus patterns, and simultaneously generate oligomer frequency histograms and other statistics. © 1990.
引用
收藏
页码:39 / 45
页数:7
相关论文
共 14 条
[1]   POTENTIAL METAL-BINDING DOMAINS IN NUCLEIC-ACID BINDING-PROTEINS [J].
BERG, JM .
SCIENCE, 1986, 232 (4749) :485-487
[2]  
Chou P Y, 1978, Adv Enzymol Relat Areas Mol Biol, V47, P45
[3]  
Dayhoff MO, 1978, ATL PROTEIN SEQ STRU, V5, P345
[4]   A COMPREHENSIVE SET OF SEQUENCE-ANALYSIS PROGRAMS FOR THE VAX [J].
DEVEREUX, J ;
HAEBERLI, P ;
SMITHIES, O .
NUCLEIC ACIDS RESEARCH, 1984, 12 (01) :387-395
[5]  
DICKERSON RE, 1969, STRUCTURE ACTION PRO, P19
[6]   ANALYSIS OF ACCURACY AND IMPLICATIONS OF SIMPLE METHODS FOR PREDICTING SECONDARY STRUCTURE OF GLOBULAR PROTEINS [J].
GARNIER, J ;
OSGUTHORPE, DJ ;
ROBSON, B .
JOURNAL OF MOLECULAR BIOLOGY, 1978, 120 (01) :97-120
[7]  
GEORGE DG, 1986, INT S WORKSHOP MACRO
[8]  
GEORGE DW, 1985, USERS GUIDE PROTEIN
[9]  
JURKA J, 1987, MATRIX BIOL KNOWLEDG
[10]  
LEHNINGER AL, 1982, PRINCIPLES BIOCH, pCH5