Draft Genome Sequence of the Basidiomycete White-Rot Fungus Phlebia centrifuga

被引：8

作者：

Makela, Miia R. ^{[1
]}

Peng, Mao ^{[2
]}

Granchi, Zoraide ^{[3
]}

Chin-A-Woeng, Thomas ^{[3
]}

Hegi, Rosa ^{[3
]}

van Pelt, Sake, I ^{[3
]}

Ahrendt, Steven ^{[4
,5
]}

Riley, Robert ^{[4
]}

Hainaut, Matthieu ^{[6
,7
]}

Henrissat, Bernard ^{[6
,7
,8
]}

Grigoriev, Igor, V ^{[4
,5
]}

de Vries, Ronald P. ^{[2
]}

Hilden, Kristiina S. ^{[1
]}

机构：

[1] Univ Helsinki, Dept Microbiol, Helsinki, Finland

[2] Univ Utrecht, Westerdijk Fungal Biodivers Inst, Utrecht, Netherlands

[3] GenomeScan BV, Leiden, Netherlands

[4] US Dept Energy Joint Genome Inst, Walnut Creek, CA USA

[5] Univ Calif Berkeley, Dept Plant & Microbial Biol, Berkeley, CA 94720 USA

[6] Aix Marseille Univ, CNRS UMR 7257, Marseille, France

[7] INRA, USC AFMB 1408, Marseille, France

[8] King Abdulaziz Univ, Dept Biol Sci, Jeddah, Saudi Arabia

来源：

GENOME ANNOUNCEMENTS | 2018年 / 6卷 / 14期

基金：

芬兰科学院;

关键词：

D O I：

10.1128/genomeA.01414-17

中图分类号：

学科分类号：

摘要：

Here, we report the genome sequence of wood-decaying white-rot fungus Phlebia centrifuga strain FBCC195, isolated from Norway spruce (Picea abies) in Finnish Lapland. The 34.66-Mb genome containing 13,785 gene models is similar to the genome length reported for other saprobic white-rot species.

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相关论文

共 11 条

[1]

Eriksson J, 1981, CORTICIACEAE N EUROP, V6

[2] MycoCosm portal: gearing up for 1000 fungal genomes [J].

Grigoriev, Igor V. ;

Nikitin, Roman ;

Haridas, Sajeet ;

Kuo, Alan ;

Ohm, Robin ;

Otillar, Robert ;

Riley, Robert ;

Salamov, Asaf ;

Zhao, Xueling ;

Korzeniewski, Frank ;

Smirnova, Tatyana ;

Nordberg, Henrik ;

Dubchak, Inna ;

Shabalov, Igor .

NUCLEIC ACIDS RESEARCH, 2014, 42 (D1) :D699-D704

[3] QUAST: quality assessment tool for genome assemblies [J].

Gurevich, Alexey ;

Saveliev, Vladislav ;

Vyahhi, Nikolay ;

Tesler, Glenn .

BIOINFORMATICS, 2013, 29 (08) :1072-1075

[4] DEGRADATION OF C-14-LABELED POPLAR WOOD LIGNIN BY SELECTED WHITE-ROT FUNGI [J].

HATAKKA, AI ;

UUSIRAUVA, AK .

EUROPEAN JOURNAL OF APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 1983, 17 (04) :235-242

[5] The two manganese peroxidases Pr-MnP2 and Pr-MnP3 of Phlebia radiata, a lignin-degrading basidiomycete, are phylogenetically and structurally divergent [J].

Hildén, K ;

Martinez, AT ;

Hatakka, A ;

Lundell, T .

FUNGAL GENETICS AND BIOLOGY, 2005, 42 (05) :403-419

[6] TigrScan and GlimmerHMM:: two open source ab initio eukaryotic gene-finders [J].

Majoros, WH ;

Pertea, M ;

Salzberg, SL .

BIOINFORMATICS, 2004, 20 (16) :2878-2879

[7] Production of organic acids and oxalate decarboxylase in lignin-degrading white rot fungi [J].

Mäkelä, M ;

Galkin, S ;

Hatakka, A ;

Lundell, T .

ENZYME AND MICROBIAL TECHNOLOGY, 2002, 30 (04) :542-549

[8] An improved and reproducible protocol for the extraction of high quality fungal RNA from plant biomass substrates [J].

Patyshakuliyeva, Aleksandrina ;

Makela, Miia R. ;

Sietio, Outi-Maaria ;

de Vries, Ronald P. ;

Hilden, Kristiina S. .

FUNGAL GENETICS AND BIOLOGY, 2014, 72 :201-206

[9]

Rassi P., 2010, 2010 RED LIST FINNIS

[10] ABySS: A parallel assembler for short read sequence data [J].

Simpson, Jared T. ;

Wong, Kim ;

Jackman, Shaun D. ;

Schein, Jacqueline E. ;

Jones, Steven J. M. ;

Birol, Inanc .

GENOME RESEARCH, 2009, 19 (06) :1117-1123