DREIDING - A GENERIC FORCE-FIELD FOR MOLECULAR SIMULATIONS

被引:5970
作者
MAYO, SL [1 ]
OLAFSON, BD [1 ]
GODDARD, WA [1 ]
机构
[1] BIODESIGN INC, 199 S LOS ROBLES, SUITE 540, PASADENA, CA 91101 USA
关键词
D O I
10.1021/j100389a010
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We report the parameters for a new generic force field, DREIDING, that we find useful for predicting structures and dynamics of organic, biological, and main-group inorganic molecules. The philosophy in DREIDING is to use general force constants and geometry parameters based on simple hybridization considerations rather than individual force constants and geometric parameters that depend on the particular combination of atoms involved in the bond, angle, or torsion terms. Thus all bond distances are derived from atomic radii, and there is only one force constant each for bonds, angles, and inversions and only six different values for torsional barriers. Parameters are defined for all possible combinations of atoms and new atoms can be added to the force field rather simply. This paper reports the parameters for the ''nonmetallic'' main-group elements (B, C, N, O, F columns for the C, Si, Ge, and Sn rows) plus H and a few metals (Na, Ca, Zn, Fe). The accuracy of the DREIDING force field is tested by comparing with (i) 76 accurately determined crystal structures of organic compounds involving H, C, N, O, F, P, S, Cl, and Br, (ii) rotational barriers of a number of molecules, and (iii) relative conformational energies and barriers of a number of molecules. We find excellent results for these systems.
引用
收藏
页码:8897 / 8909
页数:13
相关论文
共 31 条
[1]   CONFORMATIONAL-ANALYSIS .130. MM2 - HYDROCARBON FORCE-FIELD UTILIZING V1 AND V2 TORSIONAL TERMS [J].
ALLINGER, NL .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1977, 99 (25) :8127-8134
[2]  
[Anonymous], 1982, ACS MONOGRAPH
[3]  
Benson, 1976, THERMOCHEMICAL KINET, V23, P613
[4]   CHARMM - A PROGRAM FOR MACROMOLECULAR ENERGY, MINIMIZATION, AND DYNAMICS CALCULATIONS [J].
BROOKS, BR ;
BRUCCOLERI, RE ;
OLAFSON, BD ;
STATES, DJ ;
SWAMINATHAN, S ;
KARPLUS, M .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1983, 4 (02) :187-217
[5]  
BRUSICH MJ, 1988, THESIS CALTECH
[6]  
CALLOMON JH, 1976, LANDOLTBORNSTEIN, V7
[7]   ATOMIC CHARGES DERIVED FROM ELECTROSTATIC POTENTIALS - A DETAILED STUDY [J].
CHIRLIAN, LE ;
FRANCL, MM .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1987, 8 (06) :894-905
[8]   NONBONDED POTENTIAL FUNCTION MODELS FOR CRYSTALLINE OXOHYDROCARBONS [J].
COX, SR ;
HSU, LY ;
WILLIAMS, DE .
ACTA CRYSTALLOGRAPHICA SECTION A, 1981, 37 (MAY) :293-301
[9]   REPRESENTATION OF THE MOLECULAR ELECTROSTATIC POTENTIAL BY A NET ATOMIC CHARGE MODEL [J].
COX, SR ;
WILLIAMS, DE .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1981, 2 (03) :304-323
[10]   HESSIAN-BIASED FORCE-FIELDS FROM COMBINING THEORY AND EXPERIMENT [J].
DASGUPTA, S ;
GODDARD, WA .
JOURNAL OF CHEMICAL PHYSICS, 1989, 90 (12) :7207-7215