Whole-Genome Assemblies of 56 Burkholderia Species

被引：24

作者：

Daligault, H. E. ^{[1
]}

Davenport, K. W. ^{[1
]}

Minogue, T. D. ^{[2
]}

Bishop-Lilly, K. A. ^{[3
,4
]}

Broomall, S. M. ^{[5
]}

Bruce, D. C. ^{[1
]}

Chain, P. S. ^{[1
]}

Coyne, S. R. ^{[2
]}

Frey, K. G. ^{[3
,4
]}

Gibbons, H. S. ^{[5
]}

Jaissle, J. ^{[2
]}

Koroleva, G., I ^{[6
]}

Ladner, J. T. ^{[6
]}

Lo, C-C ^{[1
]}

Munk, C. ^{[1
]}

Palacios, G. F. ^{[6
]}

Redden, C. L. ^{[3
,4
]}

Rosenzweig, C. N. ^{[5
]}

Scholz, M. B. ^{[1
,7
]}

Johnson, S. L. ^{[1
]}

机构：

[1] LANL, Los Alamos, NM 87545 USA

[2] USAMRIID, DSD, Ft Detrick, MD USA

[3] Naval Med Res Ctr NMRC Frederick, Ft Detrick, MD USA

[4] Henry M Jackson Fdn, Bethesda, MD USA

[5] US Army, ECBC, Aberdeen Proving Ground, MD USA

[6] USAMRIID, CGS, Ft Detrick, MD USA

[7] Michigan State Univ, E Lansing, MI 48824 USA

来源：

GENOME ANNOUNCEMENTS | 2014年 / 2卷 / 06期

关键词：

D O I：

10.1128/genomeA.01106-14

中图分类号：

学科分类号：

摘要：

Burkholderia is a genus of betaproteobacteria that includes three notable human pathogens: B. cepacia, B. pseudomallei, and B. mallei. While B. pseudomallei and B. mallei are considered potential biowarfare agents, B. cepacia infections are largely limited to cystic fibrosis patients. Here, we present 56 Burkholderia genomes from 8 distinct species.

引用

页数：3

共 14 条

[1]

Asche V, 2002, MOL MED MICROBIOLOGY, V1, P961

[2] Solexa Ltd [J].

Bennett, S .

PHARMACOGENOMICS, 2004, 5 (04) :433-438

[3] ALLPATHS: De novo assembly of whole-genome shotgun microreads [J].

Butler, Jonathan ;

MacCallum, Iain ;

Kleber, Michael ;

Shlyakhter, Ilya A. ;

Belmonte, Matthew K. ;

Lander, Eric S. ;

Nusbaum, Chad ;

Jaffe, David B. .

GENOME RESEARCH, 2008, 18 (05) :810-820

[4]

Chin CS, 2013, NAT METHODS, V10, P563, DOI [10.1038/NMETH.2474, 10.1038/nmeth.2474]

[5] Biological warfare - A historical perspective [J].

Christopher, GW ;

Cieslak, TJ ;

Pavlin, JA ;

Eitzen, EM .

JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION, 1997, 278 (05) :412-417

[6] Real-Time DNA Sequencing from Single Polymerase Molecules [J].

Eid, John ;

Fehr, Adrian ;

Gray, Jeremy ;

Luong, Khai ;

Lyle, John ;

Otto, Geoff ;

Peluso, Paul ;

Rank, David ;

Baybayan, Primo ;

Bettman, Brad ;

Bibillo, Arkadiusz ;

Bjornson, Keith ;

Chaudhuri, Bidhan ;

Christians, Frederick ;

Cicero, Ronald ;

Clark, Sonya ;

Dalal, Ravindra ;

deWinter, Alex ;

Dixon, John ;

Foquet, Mathieu ;

Gaertner, Alfred ;

Hardenbol, Paul ;

Heiner, Cheryl ;

Hester, Kevin ;

Holden, David ;

Kearns, Gregory ;

Kong, Xiangxu ;

Kuse, Ronald ;

Lacroix, Yves ;

Lin, Steven ;

Lundquist, Paul ;

Ma, Congcong ;

Marks, Patrick ;

Maxham, Mark ;

Murphy, Devon ;

Park, Insil ;

Pham, Thang ;

Phillips, Michael ;

Roy, Joy ;

Sebra, Robert ;

Shen, Gene ;

Sorenson, Jon ;

Tomaney, Austin ;

Travers, Kevin ;

Trulson, Mark ;

Vieceli, John ;

Wegener, Jeffrey ;

Wu, Dawn ;

Yang, Alicia ;

Zaccarin, Denis .

SCIENCE, 2009, 323 (5910) :133-138

[7] Base-calling of automated sequencer traces using phred.: II.: Error probabilities [J].

Ewing, B ;

Green, P .

GENOME RESEARCH, 1998, 8 (03) :186-194

[8] Base-calling of automated sequencer traces using phred.: I.: Accuracy assessment [J].

Ewing, B ;

Hillier, L ;

Wendl, MC ;

Green, P .

GENOME RESEARCH, 1998, 8 (03) :175-185

[9] Consed: a graphical editor for next-generation sequencing [J].

Gordon, David ;

Green, Phil .

BIOINFORMATICS, 2013, 29 (22) :2936-2937

[10] An Ergatis-based prokaryotic genome annotation web server [J].

Hemmerich, Chris ;

Buechlein, Aaron ;

Podicheti, Ram ;

Revanna, Kashi V. ;

Dong, Qunfeng .

BIOINFORMATICS, 2010, 26 (08) :1122-1124

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