Application of computational methods for anticancer drug discovery, design, and optimization

被引:51
作者
Prada-Gracia, Diego [1 ]
Huerta-Yepez, Sara [2 ]
Moreno-Vargas, Liliana M. [2 ]
机构
[1] Icahn Sch Med Mt Sinai, Dept Pharmacol Sci, Icahn Med Inst Bldg, New York, NY 10029 USA
[2] Hosp Infantil Mexico Dr Federico Gomez, Unidad Invest Enfermedades Oncol, Mexico City, DF, Mexico
来源
BOLETIN MEDICO DEL HOSPITAL INFANTIL DE MEXICO | 2016年 / 73卷 / 06期
关键词
Computer-Aided Drug Discovery and Design (CADDD); Target prediction; Pharmacophore; Hit identification; Lead optimization; Cancer;
D O I
10.1016/j.bmhimx.2016.10.006
中图分类号
R72 [儿科学];
学科分类号
100202 ;
摘要
Developing a novel drug is a complex, risky, expensive and time-consuming venture. It is estimated that the conventional drug discovery process ending with a new medicine ready for the market can take up to 15 years and more than a billion USD. Fortunately, this scenario has recently changed with the arrival of new approaches. Many novel technologies and methodologies have been developed to increase the efficiency of the drug discovery process, and computational methodologies have become a crucial component of many drug discovery programs. From hit identification to lead optimization, techniques such as ligand-or structure-based virtual screening are widely used in many discovery efforts. It is the case for designing potential anticancer drugs and drug candidates, where these computational approaches have had a major impact over the years and have provided fruitful insights into the field of cancer. In this paper, we review the concept of rational design presenting some of the most representative examples of molecules identified by means of it. Key principles are illustrated through case studies including specifically successful achievements in the field of anticancer drug design to demonstrate that research advances, with the aid of in silico drug design, have the potential to create novel anticancer drugs. (C) 2016 Hospital Infantil de Mexico Federico Gomez. Published by Masson Doyma Mexico S.A.
引用
收藏
页码:411 / 423
页数:13
相关论文
共 100 条
[81]   Recent advances in computer-aided drug design [J].
Song, Chun Meng ;
Lim, Shen Jean ;
Tong, Joo Chuan .
BRIEFINGS IN BIOINFORMATICS, 2009, 10 (05) :579-591
[82]  
STEITZ TA, 1967, J BIOL CHEM, V242, P4662
[83]   Potent Human Telomerase Inhibitors: Molecular Dynamic Simulations, Multiple Pharmacophore-Based Virtual Screening, and Biochemical Assays [J].
Talari, Faezeh Shirgahi ;
Bagherzadeh, Kowsar ;
Golestanian, Sahand ;
Jarstfer, Michael ;
Amanlou, Massoud .
JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2015, 55 (12) :2596-2610
[84]   INHIBITION OF THE GROWTH OF INFLUENZA-VIRUSES IN-VITRO BY 4-GUANIDINO-2,4-DIDEOXY-N-ACETYLNEURAMINIC ACID [J].
THOMAS, GP ;
FORSYTH, M ;
PENN, CR ;
MCCAULEY, JW .
ANTIVIRAL RESEARCH, 1994, 24 (04) :351-356
[85]   High resolution crystal structures of HIV-1 protease with a potent non-peptide inhibitor (UIC-94017) active against multi-drug-resistant clinical strains [J].
Tie, YF ;
Boross, PI ;
Wang, YF ;
Gaddis, L ;
Hussain, AK ;
Leshchenko, S ;
Ghoshl, AK ;
Louis, JM ;
Harrison, RW ;
Weber, IT .
JOURNAL OF MOLECULAR BIOLOGY, 2004, 338 (02) :341-352
[86]  
Todeschini R., 2009, MOL DESCRIPTORS CHEM
[87]   RATIONAL DESIGN OF POTENT SIALIDASE-BASED INHIBITORS OF INFLUENZA-VIRUS REPLICATION [J].
VONITZSTEIN, M ;
WU, WY ;
KOK, GB ;
PEGG, MS ;
DYASON, JC ;
JIN, B ;
PHAN, TV ;
SMYTHE, ML ;
WHITE, HF ;
OLIVER, SW ;
COLMAN, PM ;
VARGHESE, JN ;
RYAN, DM ;
WOODS, JM ;
BETHELL, RC ;
HOTHAM, VJ ;
CAMERON, JM ;
PENN, CR .
NATURE, 1993, 363 (6428) :418-423
[88]  
Wermuth C. G., 1998, ANNU REP MED CHEM, V33, P385, DOI DOI 10.1016/S0065-7743(08)61101-X
[89]   BAY 43-9006 exhibits broad spectrum oral antitumor activity and targets the RAF/MEK/ERK pathway and receptor tyrosine kinases involved in tumor progression and angiogenesis [J].
Wilhelm, SM ;
Carter, C ;
Tang, LY ;
Wilkie, D ;
McNabola, A ;
Rong, H ;
Chen, C ;
Zhang, XM ;
Vincent, P ;
McHugh, M ;
Cao, YC ;
Shujath, J ;
Gawlak, S ;
Eveleigh, D ;
Rowley, B ;
Liu, L ;
Adnane, L ;
Lynch, M ;
Auclair, D ;
Taylor, I ;
Gedrich, R ;
Voznesensky, A ;
Riedl, B ;
Post, LE ;
Bollag, G ;
Trail, PA .
CANCER RESEARCH, 2004, 64 (19) :7099-7109
[90]   Rational approach to AIDS drug design through structural biology [J].
Wlodawer, A .
ANNUAL REVIEW OF MEDICINE, 2002, 53 :595-614