Multiscale framework for biomedical simulation from molecular dynamics to continuum mechanics

被引:0
作者
Liu, W. K. [1 ]
Lee, T. R. [1 ]
Kopacz, A. M. [1 ]
Kim, H. [1 ]
Stroberg, W. [1 ]
Man, H. B. [1 ]
Ho, D. [1 ]
Kim, M. K. [2 ]
Chung, J. H. [3 ]
Decuzzi, P. [4 ]
机构
[1] Northwestern Univ, Dept Mech Engn, 2145 Sheridan Rd, Evanston, IL 60208 USA
[2] Sungkyunkwan Univ, Sch Mech Engn, Suwon, Kyonggi Do, South Korea
[3] Univ Washington, Dept Mech Engn, Seattle, WA 98195 USA
[4] Methodist Hosp, Dept Nanomed & Biomed Engn, Res Inst, Houston, TX 77030 USA
基金
美国国家科学基金会; 新加坡国家研究基金会;
关键词
multiscale framework; molecular dynamics; elastic network model; immersed molecular electrokinetic finite element method;
D O I
暂无
中图分类号
T [工业技术];
学科分类号
08 ;
摘要
In biomedical engineering, computational mechanics has played an important role in understanding complex systems such as drug delivery platforms, biosensors and blood flow. In situations where a clinical test is either prohibitively difficult or required understaning, numerical experiments offer an effective way to gain important insight. For this reason computational methods have become essential tools for biomedical problems. In this paper, the multiscale framework for biomedical simulation is shown by applying various computational methods to several biomedical problems. To show the variety and breadth of the biomedical problems that can be addressed through computation, we describe several numerical methods that are capable of addressing the multiscale, multiphysics problems found in biological systems, and motivate each with sample applications. Specifically, molecular dynamics (MD), dissipate particle dynamics (DPD), elastic network model (ELM) and immersed molecular electrokinetic finite element method (IMEFEM) are introduced with state-of-the-art research topics in biotechnology.
引用
收藏
页码:61 / 80
页数:20
相关论文
共 57 条
  • [1] Atomistic Simulation and Measurement of pH Dependent Cancer Therapeutic Interactions with Nanodiamond Carrier
    Adnan, Ashfaq
    Lam, Robert
    Chen, Hanning
    Lee, Jessica
    Schaffer, Daniel J.
    Barnard, Amanda S.
    Schatz, George C.
    Ho, Dean
    Liu, Wing Kam
    [J]. MOLECULAR PHARMACEUTICS, 2011, 8 (02) : 368 - 374
  • [2] Ananta JS, 2010, NAT NANOTECHNOL, V5, P815, DOI [10.1038/nnano.2010.203, 10.1038/NNANO.2010.203]
  • [3] Porous silicon in drug delivery devices and materials
    Anglin, Emily J.
    Cheng, Lingyun
    Freeman, William R.
    Sailor, Michael J.
    [J]. ADVANCED DRUG DELIVERY REVIEWS, 2008, 60 (11) : 1266 - 1277
  • [4] [Anonymous], 2002, APPL MECH REV
  • [5] Belytschko T., 2000, NONLINEAR FINITE ELE
  • [6] Buehler M.J., 2006, J MAT RES
  • [7] A Many-Body Dissipative Particle Dynamics Study of Spontaneous Capillary Imbibition and Drainage
    Chen, Chen
    Gao, Chunning
    Zhuang, Lin
    Li, Xuefeng
    Wu, Pingcang
    Dong, Jinfeng
    Lu, Juntao
    [J]. LANGMUIR, 2010, 26 (12) : 9533 - 9538
  • [8] Molecular diagnostics in tuberculosis
    Cheng, VCC
    Yew, WW
    Yuen, KY
    [J]. EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES, 2005, 24 (11) : 711 - 720
  • [9] A Coarse-Grained Model Based on Morse Potential for Water and n-Alkanes
    Chiu, See-Wing
    Scott, H. Larry
    Jakobsson, Eric
    [J]. JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2010, 6 (03) : 851 - 863
  • [10] Dissipative particle dynamics for interacting multicomponent systems
    Coveney, PV
    Espanol, P
    [J]. JOURNAL OF PHYSICS A-MATHEMATICAL AND GENERAL, 1997, 30 (03): : 779 - 784