CONSISTENT FORCE-FIELD STUDIES OF INTER-MOLECULAR FORCES IN HYDROGEN-BONDED CRYSTALS .2. BENCHMARK FOR THE OBJECTIVE COMPARISON OF ALTERNATIVE FORCE-FIELDS

被引:475
作者
HAGLER, AT
LIFSON, S
DAUBER, P
机构
[1] Chemical Physics Department, Weizmann Institute of Science, Rehovot
关键词
D O I
10.1021/ja00512a002
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
A benchmark for the objective comparison of intermolecular force fields of carboxylic acids and amides is established. It includes all experimental data used by most authors of empirical energy studies hitherto. In order to demonstrate the utility of such a benchmark, a detailed comparison between three force fields is performed. First, root mean square deviations of various significant properties for the set of acid crystals and for that of amides are presented for all three force fields. This is followed by an individual comparison of these deviations in all the 14 carboxylic acids and the 12 amides of the benchmark. Many observations and conclusions of interest are derived from the benchmark comparison. Among them, the following are of a more general character : (1) The 9-6-1 CFF potential gives a best overall fit to experiment. (2) The calculated amide crystal properties fit generally better than those of carboxylic acid in all force fields, probably because the amide group forms twice as many hydrogen bonds, and therefore tends as a rule to form more extended networks of hydrogen bonds in the crystals. (3) There is a significant correlation of the degree of fit of most individual crystals in all force fields. The “bad” crystals are generally bad in all force fields, and similarly for the “good” ones. Possible reasons for these trends are discussed. © 1979, American Chemical Society. All rights reserved.
引用
收藏
页码:5122 / 5130
页数:9
相关论文
共 21 条
[1]  
BERNSTEIN J, 1978, J AM CHEM SOC, V100, P673, DOI 10.1021/ja00471a001
[2]  
BOLES G, 1977, J AM CHEM SOC, V99, P5550
[3]   CONFORMATIONAL-ANALYSIS OF BIOPOLYMERS - CONFORMATIONAL ENERGY CALCULATIONS [J].
BRANT, DA .
ANNUAL REVIEW OF BIOPHYSICS AND BIOENGINEERING, 1972, 1 :369-408
[4]   DIFFERENCES OF NUCLEOTIDE STACKING PATTERNS IN A CRYSTAL AND IN BINARY COMPLEXES - CASE OF ADENINE [J].
CAILLET, J ;
CLAVERIE, P .
BIOPOLYMERS, 1974, 13 (03) :601-614
[5]   ANALYTICAL POTENTIALS FROM ABINITIO COMPUTATIONS FOR INTERACTION BETWEEN BIOMOLECULES .1. WATER WITH AMINO-ACIDS [J].
CLEMENTI, E ;
CAVALLONE, F ;
SCORDAMAGLIA, R .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1977, 99 (17) :5531-5545
[6]   ENERGY PARAMETERS IN POLYPEPTIDES .8. EMPIRICAL POTENTIAL-ENERGY ALGORITHM FOR CONFORMATIONAL-ANALYSIS OF LARGE MOLECULES [J].
DUNFIELD, LG ;
BURGESS, AW ;
SCHERAGA, HA .
JOURNAL OF PHYSICAL CHEMISTRY, 1978, 82 (24) :2609-2616
[7]   ENERGY FUNCTIONS FOR PEPTIDES AND PROTEINS .2. AMIDE HYDROGEN-BOND AND CALCULATION OF AMIDE CRYSTAL PROPERTIES [J].
HAGLER, AT ;
LIFSON, S .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1974, 96 (17) :5327-5335
[8]   ENERGY FUNCTIONS FOR PEPTIDES AND PROTEINS .1. DERIVATION OF A CONSISTENT FORCE-FIELD INCLUDING HYDROGEN-BOND FROM AMIDE CRYSTALS [J].
HAGLER, AT ;
HULER, E ;
LIFSON, S .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1974, 96 (17) :5319-5327
[9]   AMIDE HYDROGEN-BOND AND ANOMALOUS PACKING OF ADIPAMIDE [J].
HAGLER, AT ;
LEISEROWITZ, L .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1978, 100 (18) :5879-5887
[10]   EXPERIMENTAL AND THEORETICAL STUDIES OF BARRIER TO ROTATION ABOUT N-C-ALPHA AND C-ALPHA-C' BONDS (PHI AND PSI) IN AMIDES AND PEPTIDES [J].
HAGLER, AT ;
LEISEROWITZ, L ;
TUVAL, M .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1976, 98 (15) :4600-4612