LARGE-AMPLITUDE NONLINEAR MOTIONS IN PROTEINS

被引：691
作者：
GARCIA, AE
机构：
[1] Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos
来源：
PHYSICAL REVIEW LETTERS | 1992年 / 68卷 / 17期
关键词：
D O I：
10.1103/PhysRevLett.68.2696
中图分类号：
O4 [物理学];
学科分类号：
0702 ;
摘要：
A molecular-dynamics calculation on a hydrated protein, crambin, demonstrates that (i) neighboring dihedral angles are correlated to local transitions in the protein backbone, and that (ii) the amplitude of collective excitations, representing correlated global motions in the protein, samples multicentered distributions. The time dependence of the multicentered dihedral and collective excitations show rapid transitions from the center of one distribution to another, followed for some time by damped, low-amplitude motions around one center. The global nonlinear collective excitations are responsible for most of the atomic fluctuations of the molecule. An analysis appropriate to multimodal conformations is reported.
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页码：2696 / 2699
页数：4
相关论文
共 27 条
[1]   PROTEIN STATES AND PROTEIN QUAKES [J].
ANSARI, A ;
BERENDZEN, J ;
BOWNE, SF ;
FRAUENFELDER, H ;
IBEN, IET ;
SAUKE, TB ;
SHYAMSUNDER, E ;
YOUNG, RD .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1985, 82 (15) :5000-5004
[2]  
BROOKS CL, 1988, ADV CHEM PHYSICS, V71
[3]   MULTIPLE CONFORMATIONAL STATES OF PROTEINS - A MOLECULAR-DYNAMICS ANALYSIS OF MYOGLOBIN [J].
ELBER, R ;
KARPLUS, M .
SCIENCE, 1987, 235 (4786) :318-321
[4]  
ENGLANDER SW, 1984, Q REV BIOPHYS, V16, P521
[5]   THE ENERGY LANDSCAPES AND MOTIONS OF PROTEINS [J].
FRAUENFELDER, H ;
SLIGAR, SG ;
WOLYNES, PG .
SCIENCE, 1991, 254 (5038) :1598-1603
[6]  
FRAUENFELDER H, 1989, CHEM SCRIPTA, V29A, P145
[7]  
GO N, 1989, CHEM SCRIPTA, V29A, P151
[8]   BROWNIAN DYNAMICS SIMULATION OF SYSTEMS WITH TRANSITIONS, PARTICULARLY CONFORMATIONAL TRANSITIONS IN CHAIN MOLECULES [J].
HELFAND, E .
PHYSICA A, 1983, 118 (1-3) :123-135
[9]   STRUCTURE OF THE HYDROPHOBIC PROTEIN CRAMBIN DETERMINED DIRECTLY FROM THE ANOMALOUS SCATTERING OF SULFUR [J].
HENDRICKSON, WA ;
TEETER, MM .
NATURE, 1981, 290 (5802) :107-113
[10]   GLASSY BEHAVIOR OF A PROTEIN [J].
IBEN, IET ;
BRAUNSTEIN, D ;
DOSTER, W ;
FRAUENFELDER, H ;
HONG, MK ;
JOHNSON, JB ;
LUCK, S ;
ORMOS, P ;
SCHULTE, A ;
STEINBACH, PJ ;
XIE, AH ;
YOUNG, RD .
PHYSICAL REVIEW LETTERS, 1989, 62 (16) :1916-1919
123