Effect of salt stress on genes encoding translation-associated proteins in Arabidopsis thaliana

被引:44
|
作者
Omidbakhshfard, Mohammad Amin [1 ,2 ,3 ]
Omranian, Nooshin [1 ,2 ]
Ahmadi, Farajollah Shahriari [3 ]
Nikoloski, Zoran [2 ]
Mueller-Roeber, Bernd [1 ,2 ]
机构
[1] Univ Potsdam, Inst Biochem & Biol, Potsdam, Germany
[2] Max Planck Inst Mol Plant Physiol, Potsdam, Germany
[3] Ferdowsi Univ Mashhad, Dept Crop Biotechnol & Breeding, Mashhad, Iran
关键词
Arabidopsis thaliana; gene expression; salt stress; ribosomal protein; translation; variation of information; clustering; dynamic time warping;
D O I
10.4161/psb.21218
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Salinity negatively affects plant growth and disturbs chloroplast integrity. here, we aimed at identifying salt-responsive translation-related genes in Arabidopsis thaliana with an emphasis on those encoding plastid-located proteins. We used quantitative real-time PCR to test the expression of 170 genes after short-term salt stress (up to 24 h) and identified several genes affected by the stress including: PRPL11, encoding plastid ribosomal protein L11, ATAB2, encoding a chloroplast-located RNA-binding protein presumably functioning as an activator of translation, and PDF1B, encoding a peptide deformylase involved in N-formyl group removal from nascent proteins synthesized in chloroplasts. these genes were previously shown to have important functions in chloroplast biology and may therefore represent new targets for biotechnological optimization of salinity tolerance.
引用
收藏
页码:1095 / 1102
页数:8
相关论文
共 50 条
  • [41] Phytocyanin-encoding genes confer enhanced ozone tolerance in Arabidopsis thaliana
    Saji, Shoko
    Saji, Hikaru
    Sage-Ono, Kimiyo
    Ono, Michiyuki
    Nakajima, Nobuyoshi
    Aono, Mitsuko
    SCIENTIFIC REPORTS, 2022, 12 (01)
  • [42] Characterization of the genes encoding the biosynthesis of polyamines under water stresses in Arabidopsis thaliana
    Urano, K
    Yoshiba, Y
    Nanjo, T
    Yamaguchi-Shinozaki, K
    Shinozaki, K
    PLANT AND CELL PHYSIOLOGY, 2002, 43 : S113 - S113
  • [43] ISOLATION AND CHARACTERIZATION OF THE GENES ENCODING BASIC AND ACIDIC CHITINASE IN ARABIDOPSIS-THALIANA
    SAMAC, DA
    HIRONAKA, CM
    YALLALY, PE
    SHAH, DM
    PLANT PHYSIOLOGY, 1990, 93 (03) : 907 - 914
  • [44] Phytocyanin-encoding genes confer enhanced ozone tolerance in Arabidopsis thaliana
    Shoko Saji
    Hikaru Saji
    Kimiyo Sage-Ono
    Michiyuki Ono
    Nobuyoshi Nakajima
    Mitsuko Aono
    Scientific Reports, 12
  • [45] Identification of genes encoding adenylate isopentenyltransferase, a cytokinin biosynthesis enzyme, in Arabidopsis thaliana
    Takei, K
    Sakakibara, H
    Sugiyama, T
    JOURNAL OF BIOLOGICAL CHEMISTRY, 2001, 276 (28) : 26405 - 26410
  • [46] Transcriptomic analysis of salt stress induced chlorophyll biosynthesis-related genes in photoheterotrophic Arabidopsis thaliana calli
    Haluk Çelik
    Burcu Arıkan
    Neslihan Turgut Kara
    Cüneyt Uçarlı
    Özgür Çakır
    Functional & Integrative Genomics, 2023, 23
  • [47] Transcriptomic analysis of salt stress induced chlorophyll biosynthesis-related genes in photoheterotrophic Arabidopsis thaliana calli
    Celik, Haluk
    Arikan, Burcu
    Kara, Neslihan Turgut
    Ucarli, Cuneyt
    Cakir, Ozgur
    FUNCTIONAL & INTEGRATIVE GENOMICS, 2023, 23 (02)
  • [48] Expression profiling of translation-associated genes in sporulating Bacillus subtilis and consequence of sporulation by gene inactivation
    Ohashi, Y
    Inaoka, T
    Kasai, K
    Ito, Y
    Okamoto, S
    Satsu, H
    Tozawa, Y
    Kawamura, F
    Ochi, K
    BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY, 2003, 67 (10) : 2245 - 2253
  • [49] Selection of Arabidopsis genes encoding secreted and plasma membrane proteins
    Goo, JH
    Park, AR
    Park, WJ
    Park, OK
    PLANT MOLECULAR BIOLOGY, 1999, 41 (03) : 415 - 423
  • [50] Oxysterol binding proteins (OSBPs) and their encoding genes in Arabidopsis and rice
    Umate, Pavan
    STEROIDS, 2011, 76 (05) : 524 - 529