Effect of salt stress on genes encoding translation-associated proteins in Arabidopsis thaliana

被引:44
|
作者
Omidbakhshfard, Mohammad Amin [1 ,2 ,3 ]
Omranian, Nooshin [1 ,2 ]
Ahmadi, Farajollah Shahriari [3 ]
Nikoloski, Zoran [2 ]
Mueller-Roeber, Bernd [1 ,2 ]
机构
[1] Univ Potsdam, Inst Biochem & Biol, Potsdam, Germany
[2] Max Planck Inst Mol Plant Physiol, Potsdam, Germany
[3] Ferdowsi Univ Mashhad, Dept Crop Biotechnol & Breeding, Mashhad, Iran
关键词
Arabidopsis thaliana; gene expression; salt stress; ribosomal protein; translation; variation of information; clustering; dynamic time warping;
D O I
10.4161/psb.21218
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Salinity negatively affects plant growth and disturbs chloroplast integrity. here, we aimed at identifying salt-responsive translation-related genes in Arabidopsis thaliana with an emphasis on those encoding plastid-located proteins. We used quantitative real-time PCR to test the expression of 170 genes after short-term salt stress (up to 24 h) and identified several genes affected by the stress including: PRPL11, encoding plastid ribosomal protein L11, ATAB2, encoding a chloroplast-located RNA-binding protein presumably functioning as an activator of translation, and PDF1B, encoding a peptide deformylase involved in N-formyl group removal from nascent proteins synthesized in chloroplasts. these genes were previously shown to have important functions in chloroplast biology and may therefore represent new targets for biotechnological optimization of salinity tolerance.
引用
收藏
页码:1095 / 1102
页数:8
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