THE IMPACT OF MORPHOLOGICAL VARIANTS ON A CLADISTIC HYPOTHESIS WITH AN EXAMPLE FROM A MYOLOGICAL DATA SET

被引:10
|
作者
KESNER, MH
机构
关键词
VARIANTS; MYOLOGY; CLADISTIC CHARACTERS; CLADISTIC METHODS; SAMPLE SIZE;
D O I
10.2307/2413580
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
The larger the sample size per operational taxonomic unit (OTU), the higher the probability of identifying the correct character state for that OTU. Large numbers of characters are essential to assure the accuracy and stability of a phylogenetic reconstruction. Both large sample sizes and large numbers of characters are desirable, but given limited time and resources, cladistic analysis often involves a trade-off between the number of specimens one can study per OTU versus the number of characters one has time to discover. For a given data set, what balance of sample size and character number will yield an acceptably small error (the probability that a recognized clade is false) and yet achieve sufficient power (the probability of recognition of a valid clade)? Myological data compiled for a study of arvicoline rodents were manipulated to determine the effect of character number reduction, the effect of deliberate inclusion of incorrect character states (mistakes), and the interaction of these two effects in an attempt to provide one answer to this question. The results indicate that with sample sizes of four specimens per OTU (some of which were at supraspecific levels), the frequency of mistakes is sufficient to cause unacceptable increases in error and losses of power in resulting cladograms. However, the error and power of the resulting cladogram are more sensitive to reductions in character number than to the inclusion of an occasional incorrect character state. Beyond a minimal increase in sample size (to five specimens per OTU in this example), it is more advantageous to search for new characters than it is to increase the number of specimens surveyed. Because adequate sample size is a function of the taxonomic level of the study and the data structure of the characters, these specific results should not be broadly applied, but the methods used to determine the appropriate sample size for the arvicoline data are applicable to other studies. We must devote more effort to increasing the reliability of our data sets to assure highly reliable cladograms.
引用
收藏
页码:41 / 57
页数:17
相关论文
共 49 条
  • [1] Progress in understanding the phylogeny of the Juncaceae: Inferences from the cladistic analysis of plastid data set
    Zaveska Drabkova, L
    Kirschner, J
    Vlcek, C
    CLADISTICS, 2004, 20 (01) : 81 - 82
  • [2] Phylogeny of New Zealand hepialid moths (Lepidoptera: Hepialidae) inferred from a cladistic analysis of morphological data
    Brown, B
    Dugdale, JS
    Emberson, RM
    Paterson, AM
    SYSTEMATIC ENTOMOLOGY, 2000, 25 (01) : 1 - 14
  • [3] PHYLOGENETIC-RELATIONSHIPS WITHIN THE COLONIAL VOLVOCALES (CHLOROPHYTA) INFERRED FROM CLADISTIC-ANALYSIS BASED ON MORPHOLOGICAL DATA
    NOZAKI, H
    ITOH, M
    JOURNAL OF PHYCOLOGY, 1994, 30 (02) : 353 - 365
  • [4] HYPOTHESIS-TESTING FROM A LIMITED SET - EXAMPLE OF MENTALLY-RETARDED SUBJECTS OUTPERFORMING COLLEGE SUBJECTS
    SPITZ, HH
    CARROLL, JG
    JOHNSON, SJ
    AMERICAN JOURNAL OF MENTAL DEFICIENCY, 1975, 79 (06): : 736 - 741
  • [5] Impact of remittances on poverty: an analysis of data from a set of developing countries
    Pradhan, Basanta K.
    Mahesh, Malvika
    ECONOMICS BULLETIN, 2016, 36 (01): : 108 - +
  • [6] 3D visualization of a resistivity data set - An example from a sludge disposal site
    Bernstone, C
    Dahlin, T
    Jonsson, P
    SYMPOSIUM ON THE APPLICATION OF GEOPHYSICS TO ENGINEERING AND ENVIRONMENTAL PROBLEMS, VOLS 1 & 2, 1997, : 917 - 925
  • [7] The impact of fossil data on annelid phylogeny inferred from discrete morphological characters
    Parry, Luke A.
    Edgecombe, Gregory D.
    Eibye-Jacobsen, Danny
    Vinther, Jakob
    PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2016, 283 (1837)
  • [8] Neither molecular nor morphological data have all the answers; with an example from Macrobrachium (Decapoda: Palaemonidae) from Australia
    Page, Timothy J.
    Hughes, Jane M.
    ZOOTAXA, 2011, (2874) : 65 - 68
  • [9] AN EXAMPLE OF CLUSTER-ANALYSIS APPLIED TO A LARGE GEOLOGIC DATA SET - AERIAL RADIOMETRIC DATA FROM COPPER MOUNTAIN, WYOMING
    PIRKLE, FL
    HOWELL, JA
    WECKSUNG, GW
    DURAN, BS
    STABLEIN, NK
    JOURNAL OF THE INTERNATIONAL ASSOCIATION FOR MATHEMATICAL GEOLOGY, 1984, 16 (05): : 479 - 498
  • [10] ATLANTIC BIRD TRAITS: a data set of bird morphological traits from the Atlantic forests of South America
    Rodrigues, Rodolpho Credo
    Hasui, Erica
    Assis, Julia Camara
    Castro Pena, Joao Carlos
    Muylaert, Renata L.
    Tonetti, Vinicius Rodrigues
    Martello, Felipe
    Regolin, Andre Luis
    Vieira da Costa, Thiago Vernaschi
    Pichorim, Mauro
    Carrano, Eduardo
    Lopes, Leonardo Esteves
    de Vasconcelos, Marcelo Ferreira
    Fontana, Carla Suertegaray
    Roos, Andrei Langeloh
    Goncalves, Fernando
    Banks-Leite, Cristina
    Cavarzere, Vagner
    Efe, Marcio Amorim
    Alves, Maria Alice S.
    Uezu, Alexandre
    Metzger, Jean Paul
    Zuquim de Antas, Paulo de Tarso
    Paschoaletto Micchi de Barros Ferraz, Katia Maria
    Calsavara, Larissa Corsini
    Bispo, Arthur Angelo
    Araujo, Helder F. P.
    Duca, Charles
    Piratelli, Augusto Joao
    Naka, Luciano N.
    Dias, Rafael Antunes
    Gatto, Cassiano A. F. R.
    Villegas Vallejos, Marcelo Alejandro
    Menezes, Gregorio dos Reis
    Bugoni, Leandro
    Rajao, Henrique
    Zocche, Jairo Jose
    Willrich, Guilherme
    da Silva, Elsimar Silveira
    Manica, Lilian Tonelli
    Guaraldo, Andre de Camargo
    Althmann, Giulyana
    Serafini, Patricia Pereira
    Francisco, Mercival Roberto
    Lugarini, Camile
    Machado, Caio Graco
    Marques-Santos, Fernando
    Bobato, Rafaela
    de Souza, Elivan Arantes
    Donatelli, Reginaldo Jose
    ECOLOGY, 2019, 100 (06)