Genome Sequence of SCB34, a Sequence Type 131 Multidrug-Resistant Escherichia coli Isolate Causing Neonatal Early-Onset Sepsis

被引：6

作者：

Chavez-Bueno, Susana ^{[1
]}

Day, Michael W. ^{[2
]}

Toby, Inimary T. ^{[2
]}

Akins, Darrin R. ^{[2
]}

Dyer, David W. ^{[2
]}

机构：

[1] Oklahoma Univ, Hlth Sci Ctr, Dept Pediat, Oklahoma City, OK 73104 USA

[2] Oklahoma Univ, Hlth Sci Ctr, Dept Microbiol Immunol, Oklahoma City, OK USA

来源：

GENOME ANNOUNCEMENTS | 2014年 / 2卷 / 03期

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D O I：

10.1128/genomeA.00514-14

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学科分类号：

摘要：

SCB34 is a sequence type 131, highly invasive, multidrug-resistant Escherichia coli isolate that produced neonatal bacteremia. Whole-genome sequencing was performed using a 250-bp library on the Illumina MiSeq platform; 5,910,264 reads were assembled de novo using the A5 assembly pipeline. The total contig length was 5,227,742 bp; the RAST server was used for annotation.

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共 13 条

[1] The RAST server: Rapid annotations using subsystems technology [J].

Aziz, Ramy K. ;

Bartels, Daniela ;

Best, Aaron A. ;

DeJongh, Matthew ;

Disz, Terrence ;

Edwards, Robert A. ;

Formsma, Kevin ;

Gerdes, Svetlana ;

Glass, Elizabeth M. ;

Kubal, Michael ;

Meyer, Folker ;

Olsen, Gary J. ;

Olson, Robert ;

Osterman, Andrei L. ;

Overbeek, Ross A. ;

McNeil, Leslie K. ;

Paarmann, Daniel ;

Paczian, Tobias ;

Parrello, Bruce ;

Pusch, Gordon D. ;

Reich, Claudia ;

Stevens, Rick ;

Vassieva, Olga ;

Vonstein, Veronika ;

Wilke, Andreas ;

Zagnitko, Olga .

BMC GENOMICS, 2008, 9 (1)

[2] Molecular epidemiology, plasmid analysis, virulence, and resistance of Escherichia coli isolated from neonatal intensive care units in Poland [J].

Chmielarczyk, Agnieszka ;

Pobiega, Monika ;

Wojkowska-Mach, Jadwiga ;

Romaniszyn, Dorota ;

Adamski, Pawel ;

Heczko, Piotr B. ;

Bulanda, Malgorzata .

DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE, 2013, 76 (04) :542-545

[3]

CLSI, 2012, CLIN LAB STAND I

[4] Emergence of human pandemic O25:H4-ST131 CTX-M-15 extended-spectrum-β-lactamase-producing Escherichia coli among companion animals [J].

Ewers, Christa ;

Grobbel, Mirjam ;

Stamm, Ivonne ;

Kopp, Peter A. ;

Diehl, Ines ;

Semmler, Torsten ;

Fruth, Angelika ;

Beutlich, Janine ;

Guerra, Beatriz ;

Wieler, Lothar H. ;

Guenther, Sebastian .

JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY, 2010, 65 (04) :651-660

[5] Escherichia coli Sequence Type ST131 as the Major Cause of Serious Multidrug-Resistant E. coli Infections in the United States [J].

Johnson, James R. ;

Johnston, Brian ;

Clabots, Connie ;

Kuskowski, Michael A. ;

Castanheira, Mariana .

CLINICAL INFECTIOUS DISEASES, 2010, 51 (03) :286-294

[6] Escherichia coli Isolates Causing Bacteremia via Gut Translocation and Urinary Tract Infection in Young Infants Exhibit Different Virulence Genotypes [J].

Mahjoub-Messai, Farah ;

Bidet, Philippe ;

Caro, Valerie ;

Diancourt, Laure ;

Biran, Valerie ;

Aujard, Yannick ;

Bingen, Edouard ;

Bonacorsi, Stephane .

JOURNAL OF INFECTIOUS DISEASES, 2011, 203 (12) :1844-1849

[7] Virulence potential and adherence properties of Escherichia coli that produce CTX-M and NDM β-lactamases [J].

Peirano, Gisele ;

Mulvey, George L. ;

Armstrong, Glen D. ;

Pitout, Johann D. D. .

JOURNAL OF MEDICAL MICROBIOLOGY, 2013, 62 :525-530

[8] Molecular epidemiology of Escherichia coli producing CTX-M β-lactamases: the worldwide emergence of clone ST131 O25:H4 [J].

Peirano, Gisele ;

Pitout, Johann D. D. .

INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS, 2010, 35 (04) :316-321

[9] Cellulose as an Architectural Element in Spatially Structured Escherichia coli Biofilms [J].

Serra, Diego O. ;

Richter, Anja M. ;

Hengge, Regine .

JOURNAL OF BACTERIOLOGY, 2013, 195 (24) :5540-5554

[10] Genotypic and Phenotypic Characterization of Invasive Neonatal Escherichia coli Clinical Isolates [J].

Shakir, Salika Mehreen ;

Goldbeck, Jessica Marie ;

Robison, Denise ;

Eckerd, Annette Marie ;

Chavez-Bueno, Susana .

AMERICAN JOURNAL OF PERINATOLOGY, 2014, 31 (11) :975-981