INSERTION AND EXCISION OF BACTEROIDES CONJUGATIVE CHROMOSOMAL ELEMENTS

Many strains of Bacteroides harbor large chromosomal elements that can transfer themselves from the chromosome of the donor to the chromosome of the recipient. Most of them carry a tetracycline resistance (TC(r)) gene and have thus been designated Tc(r) elements. In the present study, we have used transverse alternating field electrophoresis to show that all but one of the Tc(r) elements screened were approximately 70 to 80 kbp in size. The exception (Tc(r) Em(r)12256) was 150 to 200 kbp in size and may be a hybrid element. All of the TC(r) elements inserted in more than one site, but insertion was not random. The Tc(r) elements sometimes cotransfer unlinked chromosomal segments, or nonreplicating Bacteroides units (NBUs). Transverse alternating field electrophoresis analysis showed that insertion of NBUs was not random and that the NBUs did not insert near the Tc(r) element. Although attempts to clone one or both ends of a Tc(r) element have not been successful, ends of a cryptic element (XBU4422) were cloned previously and shown to be homologous to the ends of Tc(r) elements. We have obtained DNA sequences of junction regions between XBU4422 and its target from several different insertions. Comparison of junction sequences with target sequences showed that no target site duplication occurred during insertion and that XBU4422 carried 4 to 5 bp of adjacent chromosomal DNA when it excised from the chromosome and inserted in a plasmid. We identified a short region of sequence similarity between one of the ends of XBU4422 and its target site that may be important for insertion. This sequence contained an 8-bp segment that was identical to the recombinational hot spot sequence on Tn21. XBU4422 could excise itself from plasmids into which it inserted. In most cases, the excision left a single additional A behind in the target site, but precise excision was seen in one case.