SEQUENCING OF ANTISENSE DNA ANALOGS BY CAPILLARY GEL-ELECTROPHORESIS WITH LASER-INDUCED FLUORESCENCE DETECTION

被引:21
作者
BELENKY, A [1 ]
SMISEK, DL [1 ]
COHEN, AS [1 ]
机构
[1] HYBRIDON INC,WORCESTER,MA 01605
关键词
D O I
10.1016/0021-9673(94)01092-S
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
A method using capillary gel electrophoresis with laser-induced fluorescence detection is described which permits complete sequence determination of antisense DNA analogues of unknown sequence. This method, originally created as a tool to confirm the sequence of antisense oligonucleotides being developed as therapeutic drugs, utilizes data collected under a range of experimental conditions described by the Ogston model as applied to gel electrophoresis. A linear relationship independent of experimental conditions between the relative electrophoretic migration time and the oligonucleotide base number was observed and is shown to be consistent with a simplified version of this model and can be used to facilitate the sequence determination.
引用
收藏
页码:137 / 149
页数:13
相关论文
共 36 条
[1]   ONE LABEL, ONE TUBE, SANGER DNA SEQUENCING IN ONE AND 2 LANES ON A GEL [J].
ANSORGE, W ;
ZIMMERMANN, J ;
SCHWAGER, C ;
STEGEMANN, J ;
ERFLE, H ;
VOSS, H .
NUCLEIC ACIDS RESEARCH, 1990, 18 (11) :3419-3420
[2]   MOBILITY MODELS FOR STIFF AND FLEXIBLE MACROMOLECULES IN DILUTE GELS [J].
ARVANITIDOU, E ;
HOAGLAND, D ;
SMISEK, D .
BIOPOLYMERS, 1991, 31 (04) :435-447
[3]   QUANTITATIVE-ANALYSIS OF PHOSPHOROTHIOATE OLIGONUCLEOTIDES IN BIOLOGICAL-FLUIDS USING FAST ANION-EXCHANGE CHROMATOGRAPHY [J].
BOURQUE, AJ ;
COHEN, AS .
JOURNAL OF CHROMATOGRAPHY-BIOMEDICAL APPLICATIONS, 1993, 617 (01) :43-49
[4]   DNA-SEQUENCING BY CAPILLARY ELECTROPHORESIS - USE OF A 2-LASER 2-WINDOW INTENSIFIED DIODE-ARRAY DETECTION SYSTEM [J].
CARSON, S ;
COHEN, AS ;
BELENKII, A ;
RUIZMARTINEZ, MC ;
BERKA, J ;
KARGER, BL .
ANALYTICAL CHEMISTRY, 1993, 65 (22) :3219-3226
[5]   2-LABEL PEAK-HEIGHT ENCODED DNA SEQUENCING BY CAPILLARY GEL-ELECTROPHORESIS - 3 EXAMPLES [J].
CHEN, DY ;
HARKE, HR ;
DOVICHI, NJ .
NUCLEIC ACIDS RESEARCH, 1992, 20 (18) :4873-4880
[6]   SUBATTOMOLE AMINO-ACID ANALYSIS BY CAPILLARY ZONE ELECTROPHORESIS AND LASER-INDUCED FLUORESCENCE [J].
CHENG, YF ;
DOVICHI, NJ .
SCIENCE, 1988, 242 (4878) :562-564
[7]   RAPID SEPARATION OF DNA RESTRICTION FRAGMENTS USING CAPILLARY ELECTROPHORESIS [J].
COHEN, AS ;
NAJARIAN, D ;
SMITH, JA ;
KARGER, BL .
JOURNAL OF CHROMATOGRAPHY, 1988, 458 :323-333
[8]   RAPID SEPARATION AND PURIFICATION OF OLIGONUCLEOTIDES BY HIGH-PERFORMANCE CAPILLARY GEL-ELECTROPHORESIS [J].
COHEN, AS ;
NAJARIAN, DR ;
PAULUS, A ;
GUTTMAN, A ;
SMITH, JA ;
KARGER, BL .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1988, 85 (24) :9660-9663
[9]   CAPILLARY GEL-ELECTROPHORESIS OF BIOPOLYMERS [J].
COHEN, AS ;
SMISEK, DL ;
KEOHAVONG, P .
TRAC-TRENDS IN ANALYTICAL CHEMISTRY, 1993, 12 (05) :195-202
[10]  
COHEN AS, 1993, J CHROMATOGR, V638, P293