IMPROVED PREDICTIONS OF SECONDARY STRUCTURES FOR RNA

被引：817
作者：
JAEGER, JA
TURNER, DH
ZUKER, M
机构：
[1] UNIV ROCHESTER,DEPT CHEM,ROCHESTER,NY 14627
[2] NATL RES COUNCIL CANADA,DIV BIOL SCI,OTTAWA K1A 0R6,ONTARIO,CANADA
来源：
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA | 1989年 / 86卷 / 20期
关键词：
D O I：
10.1073/pnas.86.20.7706
中图分类号：
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号：
07 ; 0710 ; 09 ;
摘要：
引用
收藏
页码：7706 / 7710
页数：5
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共 47 条
[1]   STABILITY OF RIBONUCLEIC-ACID DOUBLE-STRANDED HELICES [J].
BORER, PN ;
DENGLER, B ;
TINOCO, I ;
UHLENBECK, OC .
JOURNAL OF MOLECULAR BIOLOGY, 1974, 86 (04) :843-853
[2]   STRUCTURAL CONVENTIONS FOR GROUP-I INTRONS [J].
BURKE, JM ;
BELFORT, M ;
CECH, TR ;
DAVIES, RW ;
SCHWEYEN, RJ ;
SHUB, DA ;
SZOSTAK, JW ;
TABAK, HF .
NUCLEIC ACIDS RESEARCH, 1987, 15 (18) :7217-7221
[3]   CONFORMATIONAL TRANSITIONS IN TRANSFER-RNAASP(BREWERS YEAST) - THERMODYNAMIC, KINETIC, AND ENZYMATIC MEASUREMENTS ON OLIGONUCLEOTIDE FRAGMENTS AND INTACT MOLECULE [J].
COUTTS, SM ;
GANGLOFF, J ;
DIRHEIMER, G .
BIOCHEMISTRY, 1974, 13 (19) :3938-3948
[4]   FREE-ENERGY OF IMPERFECT NUCLEIC-ACID HELICES .1. BULGE DEFECT [J].
FINK, TR ;
CROTHERS, DM .
JOURNAL OF MOLECULAR BIOLOGY, 1972, 66 (01) :1-&
[5]   IMPROVED FREE-ENERGY PARAMETERS FOR PREDICTIONS OF RNA DUPLEX STABILITY [J].
FREIER, SM ;
KIERZEK, R ;
JAEGER, JA ;
SUGIMOTO, N ;
CARUTHERS, MH ;
NEILSON, T ;
TURNER, DH .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1986, 83 (24) :9373-9377
[6]   STABILITY OF XGCGCP, GCGCYP, AND XGCGCYP HELIXES - AN EMPIRICAL ESTIMATE OF THE ENERGETICS OF HYDROGEN-BONDS IN NUCLEIC-ACIDS [J].
FREIER, SM ;
SUGIMOTO, N ;
SINCLAIR, A ;
ALKEMA, D ;
NEILSON, T ;
KIERZEK, R ;
CARUTHERS, MH ;
TURNER, DH .
BIOCHEMISTRY, 1986, 25 (11) :3214-3219
[7]   CONTRIBUTIONS OF DANGLING END STACKING AND TERMINAL BASE-PAIR FORMATION TO THE STABILITIES OF XGGCCP, XCCGGP, XGGCCYP, AND XCCGGYP HELIXES [J].
FREIER, SM ;
ALKEMA, D ;
SINCLAIR, A ;
NEILSON, T ;
TURNER, DH .
BIOCHEMISTRY, 1985, 24 (17) :4533-4539
[8]   FREE-ENERGY CONTRIBUTIONS OF G.U AND OTHER TERMINAL MISMATCHES TO HELIX STABILITY [J].
FREIER, SM ;
KIERZEK, R ;
CARUTHERS, MH ;
NEILSON, T ;
TURNER, DH .
BIOCHEMISTRY, 1986, 25 (11) :3209-3213
[9]   EXPLORATION OF THE L18 BINDING-SITE ON 5S RNA BY DELETION MUTAGENESIS [J].
GEWIRTH, DT ;
MOORE, PB .
NUCLEIC ACIDS RESEARCH, 1988, 16 (22) :10717-10732
[10]   FREE-ENERGY OF IMPERFECT NUCLEIC-ACID HELICES .2. SMALL HAIRPIN LOOPS [J].
GRALLA, J ;
CROTHERS, DM .
JOURNAL OF MOLECULAR BIOLOGY, 1973, 73 (04) :497-&
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