INTERNAL BETA-TURN HYDRATION - CRYSTALLOGRAPHIC EVIDENCE AND MOLECULAR-DYNAMICS SIMULATION

被引:5
作者
DINOLA, A
GAVUZZO, E
MAZZA, F
POCHETTI, G
ROCCATANO, D
机构
[1] CNR,IST STRUTTURIST CHIM,I-00016 MONTEROTONDO,ITALY
[2] UNIV ROMA LA SAPIENZA,DIPARTIMENTO CHIM,I-00185 ROME,ITALY
[3] UNIV LAQUILA,DIPARTIMENTO CHIM,I-67010 LAQUILA,ITALY
关键词
D O I
10.1021/j100023a047
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The X-ray structure analysis of the monohydrate phase of the peptide For-Met-Leu-Delta(2)Phe-Phe-OMe has revealed that the type-II beta-turn supported by the 4 --> 1 H-bond, expected for the backbone containing the alpha,beta-unsaturated residue Delta(2)Phe, has been modified by the water molecule. The water prevents the 4 --> 1 H-bond between Met CO and Phe NH groups, forming a H-bonded bridge between these groups and causing significant modification of the secondary structure. The hydrated beta-turn found in the crystal can be an interesting static model useful for the comprehension of the internal hydration mechanism of beta-turns, secondary structures largely present in globular proteins, but generally distributed only on their surface. The internal hydration, with a H-bonded water bridge and modification of the secondary structure, differs from the most common external hydration, where the externally bound water does not cause modification of secondary structure. In order to verify whether the internally hydrated beta-turn could be found even in solution, a molecular dynamics simulation has been performed. The results show that the two forms, the beta-turn with the 4 --> 1 H-bond and that with the H-bonded water bridge, do not differ substantially in their energy values. Moreover, no high-energy barrier prevents interconversion between the two forms. The internal beta-turn hydration presents strong analogies with the internally hydrated helical peptide segments found in oligopeptides and proteins.
引用
收藏
页码:9625 / 9631
页数:7
相关论文
共 36 条
[1]  
[Anonymous], 1974, INT TABLES XRAY CRYS, VIV
[2]   A MOLECULAR-DYNAMICS STUDY OF THE C-TERMINAL FRAGMENT OF THE L7/L12 RIBOSOMAL-PROTEIN - SECONDARY STRUCTURE MOTION IN A 150 PICOSECOND TRAJECTORY [J].
AQVIST, J ;
VANGUNSTEREN, WF ;
LEIJONMARCK, M ;
TAPIA, O .
JOURNAL OF MOLECULAR BIOLOGY, 1985, 183 (03) :461-477
[3]   PEPTIDE-CHAIN STRUCTURE PARAMETERS, BOND ANGLES AND CONFORMATIONAL ANGLES FROM THE CAMBRIDGE STRUCTURAL DATABASE [J].
ASHIDA, T ;
TSUNOGAE, Y ;
TANAKA, I ;
YAMANE, T .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE, 1987, 43 :212-218
[4]  
AUBRY A, 1981, INT J PEPT PROT RES, V18, P195
[5]  
BENEDETTI E, 1983, INT J PEPT PROT RES, V22, P1
[6]   MOLECULAR-DYNAMICS WITH COUPLING TO AN EXTERNAL BATH [J].
BERENDSEN, HJC ;
POSTMA, JPM ;
VANGUNSTEREN, WF ;
DINOLA, A ;
HAAK, JR .
JOURNAL OF CHEMICAL PHYSICS, 1984, 81 (08) :3684-3690
[7]  
Berendsen HJC., 1981, INTERACTION MODELS W, P331, DOI [10.1007/978-94-015-7658-1_21, DOI 10.1007/978-94-015-7658-1_21]
[8]  
CAMALLI M, Patent No. 3540386
[9]  
DENTINO AR, 1991, J BIOL CHEM, V266, P18460
[10]   THEORETICAL EVIDENCE FOR DESTABILIZATION OF AN ALPHA-HELIX BY WATER INSERTION - MOLECULAR-DYNAMICS OF HYDRATED DECAALANINE [J].
DICAPUA, FM ;
SWAMINATHAN, S ;
BEVERIDGE, DL .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1990, 112 (19) :6768-6771