Sphingomonas taxi, Isolated from Cucurbita pepo, Proves to Be a DDE-Degrading and Plant Growth-Promoting Strain

被引：13

作者：

Eevers, Nele ^{[1
]}

Van Hamme, Jonathan D. ^{[2
]}

Bottos, Eric M. ^{[2
]}

Weyens, Nele ^{[1
]}

Vangronsveld, Jaco ^{[1
]}

机构：

[1] Hasselt Univ, Ctr Environm Sci, Diepenbeek, Belgium

[2] Thompson Rivers Univ, Dept Biol Sci, Kamloops, BC, Canada

来源：

GENOME ANNOUNCEMENTS | 2015年 / 3卷 / 03期

关键词：

D O I：

10.1128/genomeA.00489-15

中图分类号：

学科分类号：

摘要：

The draft genome of Sphingomonas taxi, a strain of the Sphingomonadaceae isolated from Cucurbita pepo root tissue, is presented. This Gram-negative bacterium shows 2,2-bis(p-chlorophenyl)-1,1-dichloroethylene (DDE)-degrading potential and plant growth-promoting capacities. An analysis of its 3.9-Mb draft genome will enhance the understanding of DDE-degradation pathways and phytoremediation applications for DDE-contaminated soils.

引用

页数：2

共 16 条

[1] Toward an online repository of Standard Operating Procedures (SOPs) for (Meta) genomic annotation [J].

Angiuoli, Samuel V. ;

Gussman, Aaron ;

Klimke, William ;

Cochrane, Guy ;

Field, Dawn ;

Garrity, George ;

Kodira, Chinnappa D. ;

Kyrpides, Nikos ;

Madupu, Ramana ;

Markowitz, Victor ;

Tatusova, Tatiana ;

Thomson, Nick ;

White, Owen .

OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY, 2008, 12 (02) :137-141

[2] SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing [J].

Bankevich, Anton ;

Nurk, Sergey ;

Antipov, Dmitry ;

Gurevich, Alexey A. ;

Dvorkin, Mikhail ;

Kulikov, Alexander S. ;

Lesin, Valery M. ;

Nikolenko, Sergey I. ;

Son Pham ;

Prjibelski, Andrey D. ;

Pyshkin, Alexey V. ;

Sirotkin, Alexander V. ;

Vyahhi, Nikolay ;

Tesler, Glenn ;

Alekseyev, Max A. ;

Pevzner, Pavel A. .

JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) :455-477

[3] The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases [J].

Caspi, Ron ;

Altman, Tomer ;

Billington, Richard ;

Dreher, Kate ;

Foerster, Hartmut ;

Fulcher, Carol A. ;

Holland, Timothy A. ;

Keseler, Ingrid M. ;

Kothari, Anamika ;

Kubo, Aya ;

Krummenacker, Markus ;

Latendresse, Mario ;

Mueller, Lukas A. ;

Ong, Quang ;

Paley, Suzanne ;

Subhraveti, Pallavi ;

Weaver, Daniel S. ;

Weerasinghe, Deepika ;

Zhang, Peifen ;

Karp, Peter D. .

NUCLEIC ACIDS RESEARCH, 2014, 42 (D1) :D459-D471

[4]

Colles A, 2007, DDE SERUMWAARDEN LAN

[5] Draft Genome Sequence of Enterobacter aerogenes, a DDE-Degrading and Plant Growth-Promoting Strain Isolated from Cucurbita pepo [J].

Eevers, Nele ;

Van Hamme, Jonathan D. ;

Bottos, Eric M. ;

Weyens, Nele ;

Vangronsveld, Jaco .

GENOME ANNOUNCEMENTS, 2015, 3 (02)

[6] QUAST: quality assessment tool for genome assemblies [J].

Gurevich, Alexey ;

Saveliev, Vladislav ;

Vyahhi, Nikolay ;

Tesler, Glenn .

BIOINFORMATICS, 2013, 29 (08) :1072-1075

[7]

Hay AG, 1998, APPL ENVIRON MICROB, V64, P2141

[8]

Hay AG, 2000, FEMS MICROBIOL ECOL, V31, P249, DOI 10.1111/j.1574-6941.2000.tb00690.x

[9]

Karp Peter D, 2002, Bioinformatics, V18 Suppl 1, pS225

[10] AEROBIC DEGRADATION OF 1,1,1-TRICHLORO-2,2-BIS(4-CHLOROPHENYL)ETHANE (DDT) BY ALCALIGENES-EUTROPHUS A5 [J].

NADEAU, LJ ;

MENN, FM ;

BREEN, A ;

SAYLER, GS .

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 1994, 60 (01) :51-55

← 1 2 →