A collaborative approach to develop a multi-omics data analytics platform for translational research

被引:21
|
作者
Schumacher, Axel [1 ]
Rujan, Tamas [1 ]
Hoefkens, Jens [2 ]
机构
[1] Genedata AG, Basel 4053, Switzerland
[2] Genedata Inc, Lexington, MA 02421 USA
来源
APPLIED AND TRANSLATIONAL GENOMICS | 2014年 / 3卷 / 04期
关键词
Omics; Integration; Dataanalytics; Datasharing; Translationalresearch; Scalability;
D O I
10.1016/j.atg.2014.09.010
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The integration and analysis of large datasets in translational research has become an increasingly challenging problem. We propose a collaborative approach to integrate established data management platforms with existing analytical systems to fill the hole in the value chain between data collection and data exploitation. Our proposal in particular ensures data security and provides support for widely distributed teams of researchers. As a successful example for such an approach, we describe the implementation of a unified single platform that combines capabilities of the knowledge management platform tranSMART and the data analysis system Genedata Analyst(TM). The combined end-to-end platform helps to quickly find, enter, integrate, analyze, extract, and share patient- and drug-related data in the context of translational R&D projects. (C) 2014 Published by Elsevier B.V.
引用
收藏
页码:105 / 108
页数:4
相关论文
共 50 条
  • [11] SoyMD: a platform combining multi-omics data with various tools for soybean research and breeding
    Yang, Zhiquan
    Luo, Chengfang
    Pei, Xinxin
    Wang, Shengbo
    Huang, Yiming
    Li, Jiawei
    Liu, Baohui
    Kong, Fanjiang
    Yang, Qing-Yong
    Fang, Chao
    NUCLEIC ACIDS RESEARCH, 2024, 52 (D1) : D1639 - D1650
  • [12] Development of "KBCommons" - Universal Informatics Framework for Multi-Omics Translational Research
    Narisetti, Siva Ratna Kumari
    Zeng, Shuai
    Lyu, Zhen
    Joshi, Trupti
    2017 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE (BIBM), 2017, : 2285 - 2286
  • [13] GraphOmics: an interactive platform to explore and integrate multi-omics data
    Wandy, Joe
    Daly, Ronan
    BMC BIOINFORMATICS, 2021, 22 (01)
  • [14] GraphOmics: an interactive platform to explore and integrate multi-omics data
    Joe Wandy
    Rónán Daly
    BMC Bioinformatics, 22
  • [15] A Multi-omics Data Resource for Frontotemporal Dementia Research
    Heutink, Peter
    Menden, Kevin
    Dalmia, Anupriya
    FRONTOTEMPORAL DEMENTIAS: EMERGING MILESTONES OF THE 21ST CENTURY, 2021, 1281 : 269 - 282
  • [16] Survey on Multi-omics, and Multi-omics Data Analysis, Integration and Application
    Shahrajabian, Mohamad Hesam
    Sun, Wenli
    CURRENT PHARMACEUTICAL ANALYSIS, 2023, 19 (04) : 267 - 281
  • [17] Translational multi-omics microbiome research for strategies to improve cattle production and health
    Wang, Yixin
    Guan, Le Luo
    EMERGING TOPICS IN LIFE SCIENCES, 2022, 6 (02) : 201 - 213
  • [18] Myocarditis: A multi-omics approach
    Wang, Lulu
    Sun, Tao
    Liu, Xiaolan
    Wang, Yan
    Qiao, Xiaorong
    Chen, Nuo
    Liu, Fangqian
    Zhou, Xiaoxiang
    Wang, Hua
    Shen, Hongxing
    CLINICA CHIMICA ACTA, 2024, 554
  • [19] Integrative multi-omics and systems bioinformatics in translational neuroscience: A data mining perspective
    O'Connor, Lance M.
    O'Connor, Blake A.
    Bin Lim, Su
    Zeng, Jialiu
    Lo, Chih Hung
    JOURNAL OF PHARMACEUTICAL ANALYSIS, 2023, 13 (08) : 836 - 850
  • [20] OmicsNet 2.0: a web-based platform for multi-omics integration and network visual analytics
    Zhou, Guangyan
    Pang, Zhiqiang
    Lu, Yao
    Ewald, Jessica
    Xia, Jianguo
    NUCLEIC ACIDS RESEARCH, 2022, 50 (W1) : W527 - W533