A collaborative approach to develop a multi-omics data analytics platform for translational research

被引:21
作者
Schumacher, Axel [1 ]
Rujan, Tamas [1 ]
Hoefkens, Jens [2 ]
机构
[1] Genedata AG, Basel 4053, Switzerland
[2] Genedata Inc, Lexington, MA 02421 USA
来源
APPLIED AND TRANSLATIONAL GENOMICS | 2014年 / 3卷 / 04期
关键词
Omics; Integration; Dataanalytics; Datasharing; Translationalresearch; Scalability;
D O I
10.1016/j.atg.2014.09.010
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The integration and analysis of large datasets in translational research has become an increasingly challenging problem. We propose a collaborative approach to integrate established data management platforms with existing analytical systems to fill the hole in the value chain between data collection and data exploitation. Our proposal in particular ensures data security and provides support for widely distributed teams of researchers. As a successful example for such an approach, we describe the implementation of a unified single platform that combines capabilities of the knowledge management platform tranSMART and the data analysis system Genedata Analyst(TM). The combined end-to-end platform helps to quickly find, enter, integrate, analyze, extract, and share patient- and drug-related data in the context of translational R&D projects. (C) 2014 Published by Elsevier B.V.
引用
收藏
页码:105 / 108
页数:4
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