The integration and analysis of large datasets in translational research has become an increasingly challenging problem. We propose a collaborative approach to integrate established data management platforms with existing analytical systems to fill the hole in the value chain between data collection and data exploitation. Our proposal in particular ensures data security and provides support for widely distributed teams of researchers. As a successful example for such an approach, we describe the implementation of a unified single platform that combines capabilities of the knowledge management platform tranSMART and the data analysis system Genedata Analyst(TM). The combined end-to-end platform helps to quickly find, enter, integrate, analyze, extract, and share patient- and drug-related data in the context of translational R&D projects. (C) 2014 Published by Elsevier B.V.
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Athey Brian D, 2013, AMIA Jt Summits Transl Sci Proc, V2013, P6
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Franklin Joshua D, 2011, J Biomed Inform, V44 Suppl 1, pS103, DOI 10.1016/j.jbi.2011.05.008
机构:
Karolinska Inst, Dept Med, Ctr Mol Med, Unit Computat Med, Stockholm, Sweden
Karolinska Univ Hosp, Stockholm, SwedenKarolinska Inst, Dept Med, Ctr Mol Med, Unit Computat Med, Stockholm, Sweden
Gomez-Cabrero, David
Abugessaisa, Imad
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Karolinska Inst, Dept Med, Ctr Mol Med, Unit Computat Med, Stockholm, Sweden
Karolinska Univ Hosp, Stockholm, SwedenKarolinska Inst, Dept Med, Ctr Mol Med, Unit Computat Med, Stockholm, Sweden
Abugessaisa, Imad
Maier, Dieter
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Biomax Informat AG, Munich, GermanyKarolinska Inst, Dept Med, Ctr Mol Med, Unit Computat Med, Stockholm, Sweden
Maier, Dieter
Teschendorff, Andrew
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UCL, UCL Canc Inst, Ctr Math & Phys Life Sci & Expt Biol, London WC1E 6BT, EnglandKarolinska Inst, Dept Med, Ctr Mol Med, Unit Computat Med, Stockholm, Sweden
Teschendorff, Andrew
Merkenschlager, Matthias
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Univ London Imperial Coll Sci Technol & Med, Lymphocyte Dev Grp, MRC Clin Sci Ctr, London W12 0NN, EnglandKarolinska Inst, Dept Med, Ctr Mol Med, Unit Computat Med, Stockholm, Sweden
Merkenschlager, Matthias
Gisel, Andreas
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Ist Tecnol Biomed CNR, Unita Org, I-70126 Bari, ItalyKarolinska Inst, Dept Med, Ctr Mol Med, Unit Computat Med, Stockholm, Sweden
Gisel, Andreas
Ballestar, Esteban
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Bellvitge Biomed Res Inst IDIBELL, Canc Epigenet & Biol Program PEBC, Chromatin & Dis Grp, Barcelona, SpainKarolinska Inst, Dept Med, Ctr Mol Med, Unit Computat Med, Stockholm, Sweden
Ballestar, Esteban
Bongcam-Rudloff, Erik
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Swedish Univ Agr Sci, SLU Global Bioinformat Ctr, Dept Anim Breeding & Genet, Uppsala, SwedenKarolinska Inst, Dept Med, Ctr Mol Med, Unit Computat Med, Stockholm, Sweden
Bongcam-Rudloff, Erik
Conesa, Ana
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Ctr Invest Principe Felipe, Computat Genom Program, Valencia, SpainKarolinska Inst, Dept Med, Ctr Mol Med, Unit Computat Med, Stockholm, Sweden
Conesa, Ana
Tegner, Jesper
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h-index: 0
机构:
Karolinska Inst, Dept Med, Ctr Mol Med, Unit Computat Med, Stockholm, Sweden
Karolinska Univ Hosp, Stockholm, SwedenKarolinska Inst, Dept Med, Ctr Mol Med, Unit Computat Med, Stockholm, Sweden
机构:
Karolinska Inst, Dept Med, Ctr Mol Med, Unit Computat Med, Stockholm, Sweden
Karolinska Univ Hosp, Stockholm, SwedenKarolinska Inst, Dept Med, Ctr Mol Med, Unit Computat Med, Stockholm, Sweden
Gomez-Cabrero, David
Abugessaisa, Imad
论文数: 0引用数: 0
h-index: 0
机构:
Karolinska Inst, Dept Med, Ctr Mol Med, Unit Computat Med, Stockholm, Sweden
Karolinska Univ Hosp, Stockholm, SwedenKarolinska Inst, Dept Med, Ctr Mol Med, Unit Computat Med, Stockholm, Sweden
Abugessaisa, Imad
Maier, Dieter
论文数: 0引用数: 0
h-index: 0
机构:
Biomax Informat AG, Munich, GermanyKarolinska Inst, Dept Med, Ctr Mol Med, Unit Computat Med, Stockholm, Sweden
Maier, Dieter
Teschendorff, Andrew
论文数: 0引用数: 0
h-index: 0
机构:
UCL, UCL Canc Inst, Ctr Math & Phys Life Sci & Expt Biol, London WC1E 6BT, EnglandKarolinska Inst, Dept Med, Ctr Mol Med, Unit Computat Med, Stockholm, Sweden
Teschendorff, Andrew
Merkenschlager, Matthias
论文数: 0引用数: 0
h-index: 0
机构:
Univ London Imperial Coll Sci Technol & Med, Lymphocyte Dev Grp, MRC Clin Sci Ctr, London W12 0NN, EnglandKarolinska Inst, Dept Med, Ctr Mol Med, Unit Computat Med, Stockholm, Sweden
Merkenschlager, Matthias
Gisel, Andreas
论文数: 0引用数: 0
h-index: 0
机构:
Ist Tecnol Biomed CNR, Unita Org, I-70126 Bari, ItalyKarolinska Inst, Dept Med, Ctr Mol Med, Unit Computat Med, Stockholm, Sweden
Gisel, Andreas
Ballestar, Esteban
论文数: 0引用数: 0
h-index: 0
机构:
Bellvitge Biomed Res Inst IDIBELL, Canc Epigenet & Biol Program PEBC, Chromatin & Dis Grp, Barcelona, SpainKarolinska Inst, Dept Med, Ctr Mol Med, Unit Computat Med, Stockholm, Sweden
Ballestar, Esteban
Bongcam-Rudloff, Erik
论文数: 0引用数: 0
h-index: 0
机构:
Swedish Univ Agr Sci, SLU Global Bioinformat Ctr, Dept Anim Breeding & Genet, Uppsala, SwedenKarolinska Inst, Dept Med, Ctr Mol Med, Unit Computat Med, Stockholm, Sweden
Bongcam-Rudloff, Erik
Conesa, Ana
论文数: 0引用数: 0
h-index: 0
机构:
Ctr Invest Principe Felipe, Computat Genom Program, Valencia, SpainKarolinska Inst, Dept Med, Ctr Mol Med, Unit Computat Med, Stockholm, Sweden
Conesa, Ana
Tegner, Jesper
论文数: 0引用数: 0
h-index: 0
机构:
Karolinska Inst, Dept Med, Ctr Mol Med, Unit Computat Med, Stockholm, Sweden
Karolinska Univ Hosp, Stockholm, SwedenKarolinska Inst, Dept Med, Ctr Mol Med, Unit Computat Med, Stockholm, Sweden