THE CONFORMATION OF 6-MEMBERED RINGS DESCRIBED BY PUCKERING COORDINATES DERIVED FROM ENDOCYCLIC TORSION ANGLES

被引:63
作者
HAASNOOT, CAG
机构
[1] Computational Medicinal Chemistry Group, Organon International B. V., 5340 BH Oss
关键词
D O I
10.1021/ja00029a013
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The interrelation between the endocyclic torsion angles phi(j) (j = 0-5) in a six-membered ring is given by a truncated Fourier series, phi(j) = PHI-2 cos (P2 + 4-pi-j/6) + PHI-3 cos (phi-j). It is deduced from a set of 8451 experimentally determined six-membered ring conformations extracted from the Cambridge Structural Database that this equation reproduces the observed endocyclic torsions within 1-degrees, except for sulfur-containing rings where the margins appear to be slightly larger. These findings are corroborated by an analysis of six-membered rings generated by molecular mechanics. The ring puckering coordinates PHI-2, P2, and PHI-3 map out the conformations attainable by six-membered rings on the surface of a sphere. Thus, a convenient and pictorial description of conformational space accessible to six-membered rings is obtained. A comparison is made with the well-known Cremer-Pople ring puckering formalism. It is shown that, especially in the case of nonequilateral rings, the present method is more consistent with internal angular characteristics (e.g., local flattening) displayed by six-membered rings than the Cremer-Pople formalism.
引用
收藏
页码:882 / 887
页数:6
相关论文
共 42 条
  • [1] STRUCTURE AND BONDING IN 9-HYDROXY-1,4-DIMETHYLTHIOXANTHENIUM BIS(CARBOMETHOXY)METHYLIDE AND RELATED YLIDES
    ABBADY, MA
    ASKARI, S
    MORGAN, M
    TERNAY, AL
    GALLOY, J
    WATSON, WH
    [J]. JOURNAL OF HETEROCYCLIC CHEMISTRY, 1982, 19 (06) : 1473 - 1479
  • [2] SYSTEMATIC ANALYSIS OF STRUCTURAL DATA AS A RESEARCH TECHNIQUE IN ORGANIC-CHEMISTRY
    ALLEN, FH
    KENNARD, O
    TAYLOR, R
    [J]. ACCOUNTS OF CHEMICAL RESEARCH, 1983, 16 (05) : 146 - 153
  • [3] CAMBRIDGE CRYSTALLOGRAPHIC DATA CENTER - COMPUTER-BASED SEARCH, RETRIEVAL, ANALYSIS AND DISPLAY OF INFORMATION
    ALLEN, FH
    BELLARD, S
    BRICE, MD
    CARTWRIGHT, BA
    DOUBLEDAY, A
    HIGGS, H
    HUMMELINK, T
    HUMMELINKPETERS, BG
    KENNARD, O
    MOTHERWELL, WDS
    RODGERS, JR
    WATSON, DG
    [J]. ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE, 1979, 35 (OCT): : 2331 - 2339
  • [4] Allinger N. L., 1980, QCPE, P395
  • [5] CONFORMATION OF NON-AROMATIC RING COMPOUNDS .25. GEOMETRY AND CONFORMATION OF RING D IN SOME STEROIDS FROM X-RAY STRUCTURE DETERMINATIONS
    ALTONA, C
    GEISE, HJ
    ROMERS, C
    [J]. TETRAHEDRON, 1968, 24 (01) : 13 - &
  • [6] CONFORMATIONAL-ANALYSIS OF SUGAR RING IN NUCLEOSIDES AND NUCLEOTIDES - NEW DESCRIPTION USING CONCEPT OF PSEUDOROTATION
    ALTONA, C
    SUNDARALINGAM, M
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1972, 94 (23) : 8205 - +
  • [7] CONFORMATIONS OF CYCLOHEPTANE
    BOCIAN, DF
    PICKETT, HM
    ROUNDS, TC
    STRAUSS, HL
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1975, 97 (04) : 687 - 695
  • [8] CONFORMATIONAL STRUCTURE AND ENERGY OF CYCLOHEPTANE AND SOME RELATED OXEPANES
    BOCIAN, DF
    STRAUSS, HL
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1977, 99 (09) : 2876 - 2882
  • [9] CONFORMATION OF 6-MEMBERED RINGS
    BOEYENS, JCA
    [J]. JOURNAL OF CRYSTAL AND MOLECULAR STRUCTURE, 1978, 8 (06): : 317 - 320
  • [10] BUCOURT R, 1974, TOP STEREOCHEM, V8, P159