Draft genome of iron-oxidizing bacterium Leptospirillum sp. YQP-1 isolated from a volcanic lake in the Wudalianchi volcano, China

被引:2
作者
Yan, Lei [1 ]
Zhang, Shuang [1 ]
Yu, Gaobo [1 ]
Ni, Yongqing [2 ]
Wang, Weidong [1 ]
Hu, Huixin [1 ]
Chen, Peng [3 ]
机构
[1] Heilongjiang Bayi Agr Univ, Coll Life Sci & Technol, Xinfeng Rd 5, Daqing 163319, Peoples R China
[2] Shihezi Univ, Sch Food Sci, Shihezi 832003, Peoples R China
[3] Lanzhou Univ, Sch Pharm, Lanzhou 730000, Peoples R China
基金
黑龙江省自然科学基金; 中国国家自然科学基金;
关键词
Leptospirillum; Genome; Iron-oxidizing bacteria; Volcanic lake;
D O I
10.1016/j.gdata.2015.09.002
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Leptospirillum sp. YQP-1, a member of iron-oxidizing bacteria was isolated from volcanic lake in northeast China. Here, we report the draft genome sequence of the strain YQP-1 with a total genome size of 3,103,789 bp from 85 scaffolds (104 contigs) with 58.64% G + C content. The genome sequence can be accessed at DDBJ/EMBL/GenBank under the accession no. LIEB00000000. (C) 2015 Elsevier Inc. All rights reserved.
引用
收藏
页码:164 / +
页数:2
相关论文
共 13 条
[1]  
Cardenas J.P., 2014, GENOME ANNOUNC, V2
[2]   Identifying bacterial genes and endosymbiont DNA with Glimmer [J].
Delcher, Arthur L. ;
Bratke, Kirsten A. ;
Powers, Edwin C. ;
Salzberg, Steven L. .
BIOINFORMATICS, 2007, 23 (06) :673-679
[3]  
Donati ER, 2007, MICROBIAL PROCESSING
[4]   Complete Genome Sequence of Leptospirillum ferrooxidans Strain C2-3, Isolated from a Fresh Volcanic Ash Deposit on the Island of Miyake, Japan [J].
Fujimura, Reiko ;
Sato, Yoshinori ;
Nishizawa, Tomoyasu ;
Oshima, Kenshiro ;
Kim, Seok-Won ;
Hattori, Masahira ;
Kamijo, Takashi ;
Ohta, Hiroyuki .
JOURNAL OF BACTERIOLOGY, 2012, 194 (15) :4122-4123
[5]   New Group in the Leptospirillum Clade: Cultivation-Independent Community Genomics, Proteomics, and Transcriptomics of the New Species "Leptospirillum Group IV UBA BS" [J].
Goltsman, Daniela S. Aliaga ;
Dasari, Mauna ;
Thomas, Brian C. ;
Shah, Manesh B. ;
VerBerkmoes, Nathan C. ;
Hettich, Robert L. ;
Banfield, Jillian F. .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2013, 79 (17) :5384-5393
[6]   Leptospirillum gen. nov (ex Markosyan 1972), nom. rev., including Leptospirillum ferrooxidans sp nov (ex Markosyan 1972), nom. rev. and Leptospirillum thermoferrooxidans sp nov (Golovacheva et al. 1992) [J].
Hippe, H .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2000, 50 :501-503
[7]   The KEGG resource for deciphering the genome [J].
Kanehisa, M ;
Goto, S ;
Kawashima, S ;
Okuno, Y ;
Hattori, M .
NUCLEIC ACIDS RESEARCH, 2004, 32 :D277-D280
[8]   RNAmmer:: consistent and rapid annotation of ribosomal RNA genes [J].
Lagesen, Karin ;
Hallin, Peter ;
Rodland, Einar Andreas ;
Stærfeldt, Hans-Henrik ;
Rognes, Torbjorn ;
Ussery, David W. .
NUCLEIC ACIDS RESEARCH, 2007, 35 (09) :3100-3108
[9]  
MARKOSYAN G E, 1972, Biologicheskii Zhurnal Armenii, V25, P26
[10]   Complete genome of Leptospirillum ferriphilum ML-04 provides insight into its physiology and environmental adaptation [J].
Mi, Shuang ;
Song, Jian ;
Lin, Jianqun ;
Che, Yuanyuan ;
Zheng, Huajun ;
Lin, Jianqiang .
JOURNAL OF MICROBIOLOGY, 2011, 49 (06) :890-901