Lighting Up RNA-Cleaving DNAzymes for Biosensing

被引:19
作者
Tram, Kha
Kanda, Pushpinder
Li, Yingfu [1 ]
机构
[1] McMaster Univ, Michael G DeGroote Inst Infect Dis Res, Dept Biochem & Biomed Sci, 1280 Main St West, Hamilton, ON L8S 4K1, Canada
关键词
D O I
10.1155/2012/958683
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The development of the in vitro selection technique has allowed the isolation of functional nucleic acids, including catalytic DNA molecules (DNAzymes), from random-sequence pools. The first-ever catalytic DNA obtained by this technique in 1994 is a DNAzyme that cleaves RNA. Since then, many other RNase-like DNAzymes have been reported from multiple in vitro selection studies. The discovery of various RNase DNAzymes has in turn stimulated the exploration of these enzymatic species for innovative applications in many different areas of research, including therapeutics, biosensing, and DNA nanotechnology. One particular research topic that has received considerable attention for the past decade is the development of RNase DNAzymes into fluorescent reporters for biosensing applications. This paper provides a concise survey of the most significant achievements within this research topic.
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页数:8
相关论文
共 47 条
[1]   Structure-switching allosteric deoxyribozymes [J].
Achenbach, JC ;
Nutiu, R ;
Li, YF .
ANALYTICA CHIMICA ACTA, 2005, 534 (01) :41-51
[2]   Detection of Bacteria Using Fluorogenic DNAzymes [J].
Aguirre, Sergio D. ;
Ali, M. Monsur ;
Kanda, Pushpinder ;
Li, Yingfu .
JOVE-JOURNAL OF VISUALIZED EXPERIMENTS, 2012, (63) :1-8
[3]   Fluorogenic DNAzyme Probes as Bacterial Indicators [J].
Ali, M. Monsur ;
Aguirre, Sergio D. ;
Lazim, Hadeer ;
Li, Yingfu .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2011, 50 (16) :3751-3754
[4]   Characterization of pH3DZ1 - An RNA-cleaving deoxyribozyme with optimal activity at pH 3 [J].
Ali, Md. Monsur ;
Kandadai, Srinivas A. ;
Li, Yingfu .
CANADIAN JOURNAL OF CHEMISTRY, 2007, 85 (04) :261-273
[5]  
Breaker R R, 1994, Chem Biol, V1, P223, DOI 10.1016/1074-5521(94)90014-0
[6]   A DNA ENZYME WITH MG2+-DEPENDENT RNA PHOSPHOESTERASE ACTIVITY [J].
BREAKER, RR ;
JOYCE, GF .
CHEMISTRY & BIOLOGY, 1995, 2 (10) :655-660
[7]   Revitalization of six abandoned catalytic DNA species reveals a common three-way junction framework and diverse catalytic cores [J].
Chiuman, W ;
Li, YF .
JOURNAL OF MOLECULAR BIOLOGY, 2006, 357 (03) :748-754
[8]   Simple Fluorescent Sensors Engineered with Catalytic DNA 'MgZ' Based on a Non-Classic Allosteric Design [J].
Chiuman, William ;
Li, Yingfu .
PLOS ONE, 2007, 2 (11)
[9]   Efficient signaling platforms built from a small catalytic DNA and doubly labeled fluorogenic substrates [J].
Chiuman, William ;
Li, Yingfu .
NUCLEIC ACIDS RESEARCH, 2007, 35 (02) :401-405
[10]   Evolution of high-branching deoxyribozymes from a catalytic DNA with a three-way junction [J].
Chiuman, William ;
Li, Yingfu .
CHEMISTRY & BIOLOGY, 2006, 13 (10) :1061-1069