INTERACTIVE REGISTRATION OF INTRACELLULAR VOLUMES WITH RADIAL BASIS FUNCTIONS

被引:2
作者
Yoshizawa, Shin [1 ]
Takemoto, Satoko [1 ]
Takahashi, Miwa [2 ]
Muroi, Makoto [3 ]
Kazami, Sayaka [3 ]
Miyoshi, Hiromi [4 ]
Yokota, Hideo [1 ]
机构
[1] RIKEN, VCAD Syst Res Program, Biores Infrastruct Construct Team, 2-1 Hirosawa, Wako, Saitama 3510198, Japan
[2] Univ Geneva, Dept Biochem, CH-1211 Geneva, Switzerland
[3] RIKEN, Adv Sci Inst, Antibiot Lab, Wako, Saitama 3510198, Japan
[4] RIKEN, VCAD Syst Res Program, Computat Cell Biomech Team, Wako, Saitama 3510198, Japan
关键词
Intracellular volume; live cell imaging; non-rigid registration; least-squares RBF;
D O I
10.1142/S1469026810002847
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
We propose a novel approach to 3D image registration of intracellular volumes. The approach extends a standard image registration framework to the curved cell geometry. An intracellular volume is mapped onto another intracellular domain by using two pairs of point set surfaces approximating their nuclear and plasma membranes. The mapping function consists of the affine transformation, tetrahedral barycentric interpolation, and least-squares formulation of radial basis functions for extracted cell geometry features. An interactive volume registration system is also developed based on our approach. We demonstrate that our approach is capable of creating cell models containing multiple organelles from observed data of living cells.
引用
收藏
页码:207 / 224
页数:18
相关论文
共 44 条
[1]   Review of brain MRI image segmentation methods [J].
Balafar, M. A. ;
Ramli, A. R. ;
Saripan, M. I. ;
Mashohor, S. .
ARTIFICIAL INTELLIGENCE REVIEW, 2010, 33 (03) :261-274
[2]   Maximizing the predictivity of smooth deformable image warps through cross-validation [J].
Bartoli, Adrien .
JOURNAL OF MATHEMATICAL IMAGING AND VISION, 2008, 31 (2-3) :133-145
[3]  
Belyaev A., 2006, P 4 EUR S GEOM PROC, P89
[4]   Live cell imaging: a computational perspective [J].
Bhaskar, Harish ;
Singh, Sameer .
JOURNAL OF REAL-TIME IMAGE PROCESSING, 2007, 1 (03) :195-212
[5]   Real-time shape editing using radial basis functions [J].
Botsch, M ;
Kobbelt, L .
COMPUTER GRAPHICS FORUM, 2005, 24 (03) :611-621
[6]   A non-local algorithm for image denoising [J].
Buades, A ;
Coll, B ;
Morel, JM .
2005 IEEE COMPUTER SOCIETY CONFERENCE ON COMPUTER VISION AND PATTERN RECOGNITION, VOL 2, PROCEEDINGS, 2005, :60-65
[7]  
Carr JC, 2001, COMP GRAPH, P67, DOI 10.1145/383259.383266
[8]   ENERGY MINIMIZATION METHODS FOR CELL MOTION CORRECTION AND INTRACELLULAR ANALYSIS IN LIVE-CELL FLUORESCENCE MICROSCOPY [J].
Dzyubachyk, Oleh ;
van Cappellen, Wiggert A. ;
Essers, Jeroen ;
Niessen, Wiro ;
Meijering, Erik .
2009 IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING: FROM NANO TO MACRO, VOLS 1 AND 2, 2009, :1127-+
[9]   Computational imaging in cell biology [J].
Eils, R ;
Athale, C .
JOURNAL OF CELL BIOLOGY, 2003, 161 (03) :477-481
[10]  
Fornefett M., 1999, Proceedings. 1999 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (Cat. No PR00149), P402, DOI 10.1109/CVPR.1999.786970