Absorption spectra of several phytoplankton species were decomposed, after correction for the particle effect, to estimate in vivo absorption properties of the major light-harvesting pigments in algae. A Gaussian shape is suitable, theoretically and empirically, to represent the absorption spectra of individual photosynthetic components. The Gaussian parameters agreed well with the expected pigment compositions of 3 groups of algae, and the peak heights were linearly correlated with the concentrations of any one of the 4 major pigments measured in the samples. The linear relationship did not vary with phytoplankton species. We present here the first estimates of the 'true' in vivo specific absorption coefficients of 4 major pigments, after correction for particle effect. The results are used to reconstruct the in vivo absorption spectrum of a multi-species sample.