Motion artifact detection and correction in functional near-infrared spectroscopy: a new hybrid method based on spline interpolation method and Savitzky-Golay filtering

被引:150
作者
Jahani, Sahar [1 ,2 ]
Setarehdan, Seyed K. [2 ]
Boas, David A. [1 ,3 ]
Yucel, Meryem A. [1 ]
机构
[1] Harvard Med Sch, Massachusetts Gen Hosp, Dept Radiol, MGH HST Athinoula A Martinos Ctr Biomed Imaging, Charlestown, MA 02129 USA
[2] Univ Tehran, Coll Engn, Sch Elect & Comp Engn, Control & Intelligent Proc Ctr Excellence, Tehran, Iran
[3] Boston Univ, Neurophoton Ctr, Biomed Engn, Boston, MA 02215 USA
基金
美国国家卫生研究院;
关键词
near-infrared spectroscopy; motion artifact; Savitzky-Golay; robust locally weighted regression and smoothing; spline interpolation; MOVEMENT ARTIFACTS; TISSUE OXYGENATION; BRAIN-FUNCTION; TIME-SERIES; SYSTEM; REMOVAL; INFANTS; ROBUST; FNIRS;
D O I
10.1117/1.NPh.5.1.015003
中图分类号
Q189 [神经科学];
学科分类号
071006 ;
摘要
Motion artifact contamination in near-infrared spectroscopy (NIRS) data has become an important challenge in realizing the full potential of NIRS for real-life applications. Various motion correction algorithms have been used to alleviate the effect of motion artifacts on the estimation of the hemodynamic response function. While smoothing methods, such as wavelet filtering, are excellent in removing motion-induced sharp spikes, the baseline shifts in the signal remain after this type of filtering. Methods, such as spline interpolation, on the other hand, can properly correct baseline shifts; however, they leave residual high-frequency spikes. We propose a hybrid method that takes advantage of different correction algorithms. This method first identifies the baseline shifts and corrects them using a spline interpolation method or targeted principal component analysis. The remaining spikes, on the other hand, are corrected by smoothing methods: Savitzky-Golay (SG) filtering or robust locally weighted regression and smoothing. We have compared our new approach with the existing correction algorithms in terms of hemodynamic response function estimation using the following metrics: meansquared error, peak-to-peak error (E-p), Pearson's correlation (R-2), and the area under the receiver operator characteristic curve. We found that spline-SG hybrid method provides reasonable improvements in all these metrics with a relatively short computational time. The dataset and the code used in this study are made available online for the use of all interested researchers. (c) 2018 Society of Photo-Optical Instrumentation Engineers (SPIE)
引用
收藏
页数:11
相关论文
共 36 条
[1]  
[Anonymous], **NON-TRADITIONAL**
[2]   CONTROLLING THE FALSE DISCOVERY RATE - A PRACTICAL AND POWERFUL APPROACH TO MULTIPLE TESTING [J].
BENJAMINI, Y ;
HOCHBERG, Y .
JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY, 1995, 57 (01) :289-300
[3]   Diffuse optical imaging of brain activation: approaches to optimizing image sensitivity, resolution, and accuracy [J].
Boas, DA ;
Dale, AM ;
Franceschini, MA .
NEUROIMAGE, 2004, 23 :S275-S288
[4]   Twenty years of functional near-infrared spectroscopy: introduction for the special issue [J].
Boas, David A. ;
Elwell, Clare E. ;
Ferrari, Marco ;
Taga, Gentaro .
NEUROIMAGE, 2014, 85 :1-5
[5]   Motion artifacts in functional near-infrared spectroscopy: A comparison of motion correction techniques applied to real cognitive data [J].
Brigadoi, Sabrina ;
Ceccherini, Lisa ;
Cutini, Simone ;
Scarpa, Fabio ;
Scatturin, Pietro ;
Selb, Juliette ;
Gagnon, Louis ;
Boas, David A. ;
Cooper, Robert J. .
NEUROIMAGE, 2014, 85 :181-191
[6]   A kurtosis-based wavelet algorithm for motion artifact correction of fNIRS data [J].
Chiarelli, Antonio M. ;
Maclin, Edward L. ;
Fabiani, Monica ;
Gratton, Gabriele .
NEUROIMAGE, 2015, 112 :128-137
[7]   ROBUST LOCALLY WEIGHTED REGRESSION AND SMOOTHING SCATTERPLOTS [J].
CLEVELAND, WS .
JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION, 1979, 74 (368) :829-836
[8]   SYSTEM FOR LONG-TERM MEASUREMENT OF CEREBRAL BLOOD AND TISSUE OXYGENATION ON NEWBORN-INFANTS BY NEAR-INFRARED TRANS-ILLUMINATION [J].
COPE, M ;
DELPY, DT .
MEDICAL & BIOLOGICAL ENGINEERING & COMPUTING, 1988, 26 (03) :289-294
[9]   Bolus vs. continuous feeding: effects on splanchnic and cerebral tissue oxygenation in healthy preterm infants [J].
Corvaglia, Luigi ;
Martini, Silvia ;
Battistini, Barbara ;
Rucci, Paola ;
Aceti, Arianna ;
Faldella, Giacomo .
PEDIATRIC RESEARCH, 2014, 76 (01) :81-85
[10]   Brain-computer interface using a simplified functional near-infrared spectroscopy system [J].
Coyle, Shirley M. ;
Ward, Tomas E. ;
Markham, Charles M. .
JOURNAL OF NEURAL ENGINEERING, 2007, 4 (03) :219-226