Draft Genome Sequence of a Novel Lactobacillus salivarius Strain Isolated from Piglet

被引:6
作者
MacKenzie, Donald A. [1 ]
McLay, Kirsten [2 ]
Roos, Stefan [3 ]
Walter, Jens [4 ]
Swarbreck, David [2 ]
Drou, Nizar [2 ]
Crossman, Lisa C. [2 ,5 ,6 ]
Juge, Nathalie [1 ]
机构
[1] Norwich Res Pk, Gut Hlth & Food Safety Programme, Inst Food Res, Norwich, Norfolk, England
[2] Norwich Res Pk, Genome Anal Ctr, Norwich, Norfolk, England
[3] Swedish Univ Agr Sci, Dept Microbiol, Uppsala, Sweden
[4] Unwers Nebraska, Dept Food Scien Technol, Lincoln, NE USA
[5] Univ Fasr Anglia, Sch Biol Sci, Norwich, Norfolk, England
[6] Norwich Res Pk, SequenceAnal Co Uk, Norwich, Norfolk, England
基金
英国生物技术与生命科学研究理事会;
关键词
D O I
10.1128/genomeA.01231-13
中图分类号
学科分类号
摘要
Lactobacillus salivarius is part of the vertebrate indigenous microbiota of the gastrointestinal tract, oral cavity, and milk. The properties associated with some L. salivarius strains have led to their use as probiotics. Here we describe the draft genome of the pig isolate L. salivarius cp400, providing insights into host-niche specialization.
引用
收藏
页数:2
相关论文
共 14 条
[1]   Salivaricin P, one of a family of two-component antilisterial bacteriocins produced by intestinal isolates of Lactobacillus salivarius [J].
Barrett, Eoin ;
Hayes, Maria ;
O'Connor, Paula ;
Gardiner, Gillian ;
Fitzgerald, Gerald F. ;
Stanton, Catherine ;
Ross, R. Paul ;
Hill, Colin .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2007, 73 (11) :3719-3723
[2]   GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions [J].
Besemer, J ;
Lomsadze, A ;
Borodovsky, M .
NUCLEIC ACIDS RESEARCH, 2001, 29 (12) :2607-2618
[3]   Identifying bacterial genes and endosymbiont DNA with Glimmer [J].
Delcher, Arthur L. ;
Bratke, Kirsten A. ;
Powers, Edwin C. ;
Salzberg, Steven L. .
BIOINFORMATICS, 2007, 23 (06) :673-679
[4]   Locating proteins in the cell using TargetP, SignalP and related tools [J].
Emanuelsson, Olof ;
Brunak, Soren ;
von Heijne, Gunnar ;
Nielsen, Henrik .
NATURE PROTOCOLS, 2007, 2 (04) :953-971
[5]   Characterization of the genetic locus responsible for the production of ABP-118, a novel bacteriocin produced by the probiotic bacterium Lactobacillus salivarius subsp salivarius UCC118 [J].
Flynn, S ;
van Sinderen, D ;
Thornton, GM ;
Holo, H ;
Nes, IF ;
Collins, JK .
MICROBIOLOGY-SGM, 2002, 148 :973-984
[6]   InterPro: the integrative protein signature database [J].
Hunter, Sarah ;
Apweiler, Rolf ;
Attwood, Teresa K. ;
Bairoch, Amos ;
Bateman, Alex ;
Binns, David ;
Bork, Peer ;
Das, Ujjwal ;
Daugherty, Louise ;
Duquenne, Lauranne ;
Finn, Robert D. ;
Gough, Julian ;
Haft, Daniel ;
Hulo, Nicolas ;
Kahn, Daniel ;
Kelly, Elizabeth ;
Laugraud, Aurelie ;
Letunic, Ivica ;
Lonsdale, David ;
Lopez, Rodrigo ;
Madera, Martin ;
Maslen, John ;
McAnulla, Craig ;
McDowall, Jennifer ;
Mistry, Jaina ;
Mitchell, Alex ;
Mulder, Nicola ;
Natale, Darren ;
Orengo, Christine ;
Quinn, Antony F. ;
Selengut, Jeremy D. ;
Sigrist, Christian J. A. ;
Thimma, Manjula ;
Thomas, Paul D. ;
Valentin, Franck ;
Wilson, Derek ;
Wu, Cathy H. ;
Yeats, Corin .
NUCLEIC ACIDS RESEARCH, 2009, 37 :D211-D215
[7]   Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes [J].
Krogh, A ;
Larsson, B ;
von Heijne, G ;
Sonnhammer, ELL .
JOURNAL OF MOLECULAR BIOLOGY, 2001, 305 (03) :567-580
[8]   Culture-independent analysis of gut bacteria: the pig gastrointestinal tract microbiota revisited [J].
Leser, TD ;
Amenuvor, JZ ;
Jensen, TK ;
Lindecrona, RH ;
Boye, M ;
Moller, K .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2002, 68 (02) :673-690
[9]   Lactobacillus salivarius: Bacteriocin and probiotic activity [J].
Messaoudi, S. ;
Manai, M. ;
Kergourlay, G. ;
Prevost, H. ;
Connil, N. ;
Chobert, J. -M. ;
Dousset, X. .
FOOD MICROBIOLOGY, 2013, 36 (02) :296-304
[10]   Subspecies diversity in bacteriocin production by intestinal Lactobacillus salivarius strains [J].
O' Shea, Eileen F. ;
Connor, Paula M. O' ;
Raftis, Emma J. ;
O'Toole, Paul W. ;
Stanton, Catherine ;
Cotter, Paul D. ;
Ross, R. Paul ;
Hill, Colin .
GUT MICROBES, 2012, 3 (05) :468-473