Whole genome sequence of the emerging oomycete pathogen Pythium insidiosum strain CDC-B5653 isolated from an infected human in the USA

被引：16

作者：

Ascunce, Marina S. ^{[1
,2
]}

Huguet-Tapia, Jose C. ^{[1
]}

Braun, Edward L. ^{[3
,4
]}

Ortiz-Urquiza, Almudena ^{[5
]}

Keyhani, Nemat O. ^{[5
]}

Goss, Erica M. ^{[1
,2
]}

机构：

[1] Univ Florida, Emerging Pathogens Inst, Gainesville, FL USA

[2] Univ Florida, Dept Plant Pathol, Gainesville, FL 32611 USA

[3] Univ Florida, Dept Biol, Gainesville, FL USA

[4] Univ Florida, Genet Inst, Gainesville, FL USA

[5] Univ Florida, Dept Microbiol & Cell Sci, Gainesville, FL 32611 USA

来源：

GENOMICS DATA | 2016年 / 7卷

基金：

美国国家科学基金会;

关键词：

Oomycete; Pythium insidiosum; Pythiosis; Human emerging pathogen; Genome sequencing;

D O I：

10.1016/j.gdata.2015.11.019

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Pythium insidiosum ATCC 200269 strain CDC-B5653, an isolate from necrotizing lesions on the mouth and eye of a 2-year-old boy in Memphis, Tennessee, USA, was sequenced using a combination of Illumina MiSeq (300 bp paired-end, 14 millions reads) and PacBio (10 Kb fragment library, 356,001 reads). The sequencing data were assembled using SPAdes version 3.1.0, yielding a total genome size of 45.6 Mb contained in 8992 contigs, N-50 of 13 Kb, 57% G + C content, and 17,867 putative protein-coding genes. This Whole Genome Shotgun project has been deposited at DDBJ/EMBL/GenBank under the accession JRHR00000000. (c) 2015 The Authors. Published by Elsevier Inc.

引用

页码：60 / 61

页数：2

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