Complete Genome Sequence of Chryseobacterium sp. Strain StRB126, an N-Acylhomoserine Lactone-Degrading Bacterium Isolated from Potato Root

被引：1
作者：
Morohoshi, Tomohiro [1 ]
Wang, Wen-Zhao [2 ]
Someya, Nobutaka [3 ]
Ikeda, Tsukasa [1 ]
机构：
[1] Utsunomiya Univ, Grad Sch Engn, Dept Mat & Environm Chem, Utsunomiya, Tochigi, Japan
[2] Chinese Acad Sci, Shenzhen Inst Adv Technol, Inst Biomed & Biotechnol, Shenzhen, Peoples R China
[3] Natl Agr & Food Res Org NARO, HARC, Memuro, Hokkaido, Japan
来源：
GENOME ANNOUNCEMENTS | 2014年 / 2卷 / 05期
关键词：
D O I：
10.1128/genomeA.00952-14
中图分类号：
学科分类号：
摘要：
Chryseobacterium sp. strain StRB126 was isolated from a potato root and showed N-acylhomoserine lactone-degrading activity. Here, we present the complete 5,503,743-bp genome sequence of StRB126, which has a G+C content of 35.6% and carries 4,828 protein-coding genes, six rRNA operons, and 80 tRNA genes.
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  • [1] BASIC LOCAL ALIGNMENT SEARCH TOOL
    ALTSCHUL, SF
    GISH, W
    MILLER, W
    MYERS, EW
    LIPMAN, DJ
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1990, 215 (03) : 403 - 410
  • [2] Different Regulation and Roles of Lactonases AiiB and AttM in Agrobacterium tumefaciens C58
    Haudecoeur, Elise
    Tannieres, Melanie
    Cirou, Amelie
    Raffoux, Aurelie
    Dessaux, Yves
    Faure, Denis
    [J]. MOLECULAR PLANT-MICROBE INTERACTIONS, 2009, 22 (05) : 529 - 537
  • [3] RNAmmer:: consistent and rapid annotation of ribosomal RNA genes
    Lagesen, Karin
    Hallin, Peter
    Rodland, Einar Andreas
    Stærfeldt, Hans-Henrik
    Rognes, Torbjorn
    Ussery, David W.
    [J]. NUCLEIC ACIDS RESEARCH, 2007, 35 (09) : 3100 - 3108
  • [4] tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    Lowe, TM
    Eddy, SR
    [J]. NUCLEIC ACIDS RESEARCH, 1997, 25 (05) : 955 - 964
  • [5] Genome sequencing in microfabricated high-density picolitre reactors
    Margulies, M
    Egholm, M
    Altman, WE
    Attiya, S
    Bader, JS
    Bemben, LA
    Berka, J
    Braverman, MS
    Chen, YJ
    Chen, ZT
    Dewell, SB
    Du, L
    Fierro, JM
    Gomes, XV
    Godwin, BC
    He, W
    Helgesen, S
    Ho, CH
    Irzyk, GP
    Jando, SC
    Alenquer, MLI
    Jarvie, TP
    Jirage, KB
    Kim, JB
    Knight, JR
    Lanza, JR
    Leamon, JH
    Lefkowitz, SM
    Lei, M
    Li, J
    Lohman, KL
    Lu, H
    Makhijani, VB
    McDade, KE
    McKenna, MP
    Myers, EW
    Nickerson, E
    Nobile, JR
    Plant, R
    Puc, BP
    Ronan, MT
    Roth, GT
    Sarkis, GJ
    Simons, JF
    Simpson, JW
    Srinivasan, M
    Tartaro, KR
    Tomasz, A
    Vogt, KA
    Volkmer, GA
    [J]. NATURE, 2005, 437 (7057) : 376 - 380
  • [6] MetaGeneAnnotator: Detecting Species-Specific Patterns of Ribosomal Binding Site for Precise Gene Prediction in Anonymous Prokaryotic and Phage Genomes
    Noguchi, Hideki
    Taniguchi, Takeaki
    Itoh, Takehiko
    [J]. DNA RESEARCH, 2008, 15 (06) : 387 - 396
  • [7] Degradation of N-Acylhomoserine Lactone Quorum Sensing Signaling Molecules by Potato Root Surface-Associated Chryseobacterium Strains
    Rashid, Rumana
    Morohoshi, Tomohiro
    Someya, Nobutaka
    Ikeda, Tsukasa
    [J]. MICROBES AND ENVIRONMENTS, 2011, 26 (02) : 144 - 148
  • [8] Quorum Sensing and Quorum Quenching: The Yin and Yang of Bacterial Communication
    Uroz, Stephane
    Dessaux, Yves
    Oger, Phil
    [J]. CHEMBIOCHEM, 2009, 10 (02) : 205 - 216
  • [9] NEW PERSPECTIVES IN THE CLASSIFICATION OF THE FLAVOBACTERIA - DESCRIPTION OF CHRYSEOBACTERIUM GEN-NOV, BERGEYELLA GEN-NOV, AND EMPEDOBACTER NOM REV
    VANDAMME, P
    BERNARDET, JF
    SEGERS, P
    KERSTERS, K
    HOLMES, B
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1994, 44 (04): : 827 - 831
  • [10] Quorum sensing in plant-pathogenic bacteria
    von Bodman, SB
    Bauer, WD
    Coplin, DL
    [J]. ANNUAL REVIEW OF PHYTOPATHOLOGY, 2003, 41 : 455 - 482
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