Complete Genome Sequence of an African Swine Fever Virus Isolate from Sardinia, Italy

被引:20
作者
Granberg, Fredrik [1 ]
Torresi, Claudia [2 ]
Oggiano, Annalisa [3 ]
Malmberg, Maja [1 ,4 ]
Iscaro, Carmen [2 ]
De Mia, Gian Mario [2 ]
Belak, Sandor [1 ]
机构
[1] Swedish Univ Agr Sci SLU, Dept Biomed Sci & Vet Publ Hlth, Uppsala, Sweden
[2] IZS UM, Perugia, Italy
[3] Ist Zooprofilatt Sperimentale Sardegna IZS SA, Sassari, Italy
[4] Swedish Univ Agr Sci SLU, Dept Anim Breeding & Genet, SLU Global Bioinformat Ctr, Uppsala, Sweden
基金
瑞典研究理事会;
关键词
D O I
10.1128/genomeA.01220-16
中图分类号
学科分类号
摘要
Previous genetic characterization of African swine fever virus isolates from the Italian island of Sardinia, where the virus has been present since 1978, has largely been limited to a few selected genomic regions. Here, we report the complete genome sequence of the isolate 47/Ss/08 collected during an outbreak in 2008.
引用
收藏
页数:2
相关论文
共 12 条
[1]   Genotyping field strains of African swine fever virus by partial p72 gene characterisation [J].
Bastos, ADS ;
Penrith, ML ;
Crucière, C ;
Edrich, JL ;
Hutchings, G ;
Roger, F ;
Couacy-Hymann, E ;
Thomson, GR .
ARCHIVES OF VIROLOGY, 2003, 148 (04) :693-706
[2]   African swine fever: how can global spread be prevented? [J].
Costard, Solenne ;
Wieland, Barbara ;
de Glanville, William ;
Jori, Ferran ;
Rowlands, Rebecca ;
Vosloo, Wilna ;
Roger, Francois ;
Pfeiffer, Dirk U. ;
Dixon, Linda K. .
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2009, 364 (1530) :2683-2696
[3]   Phylogenomic analysis of 11 complete African swine fever virus genome sequences [J].
de Villiers, Etienne P. ;
Gallardo, Carmina ;
Arias, Marisa ;
da Silva, Melissa ;
Upton, Chris ;
Martin, Raquel ;
Bishop, Richard P. .
VIROLOGY, 2010, 400 (01) :128-136
[4]   Enhanced discrimination of African swine fever virus isolates through nucleotide sequencing of the p54, p72, and pB602L (CVR) genes [J].
Gallardo, Carmina ;
Mwaengo, Dufton M. ;
Macharia, Joseph M. ;
Arias, Marisa ;
Taracha, Evans A. ;
Soler, Alejandro ;
Okoth, Edward ;
Martin, Elena ;
Kasiti, Jackline ;
Bishop, Richard P. .
VIRUS GENES, 2009, 38 (01) :85-95
[5]   Genetic characterisation of African swine fever viruses from recent and historical outbreaks in Sardinia (1978-2009) [J].
Giammarioli, Monica ;
Gallardo, Carmina ;
Oggiano, Annalisa ;
Iscaro, Carmen ;
Nieto, Raquel ;
Pellegrini, Claudia ;
Giudici, Silvia Dei ;
Arias, Marisa ;
De Mia, Gian Mario .
VIRUS GENES, 2011, 42 (03) :377-387
[6]   Reducing assembly complexity of microbial genomes with single-molecule sequencing [J].
Koren, Sergey ;
Harhay, Gregory P. ;
Smith, Timothy P. L. ;
Bono, James L. ;
Harhay, Dayna M. ;
Mcvey, Scott D. ;
Radune, Diana ;
Bergman, Nicholas H. ;
Phillippy, Adam M. .
GENOME BIOLOGY, 2013, 14 (09)
[7]  
Langmead B, 2012, NAT METHODS, V9, P357, DOI [10.1038/NMETH.1923, 10.1038/nmeth.1923]
[8]   Unipro UGENE: a unified bioinformatics toolkit [J].
Okonechnikov, Konstantin ;
Golosova, Olga ;
Fursov, Mikhail .
BIOINFORMATICS, 2012, 28 (08) :1166-1167
[9]  
Sanna G, 2016, TRANSBOUND EMERG DIS
[10]   Prokka: rapid prokaryotic genome annotation [J].
Seemann, Torsten .
BIOINFORMATICS, 2014, 30 (14) :2068-2069