Graph-based unsupervised feature selection and multiview clustering for microarray data

被引:0
作者
Tripti Swarnkar
Pabitra Mitra
机构
[1] Indian Institute of Technology,Department of Computer Science & Engineering
[2] Siksha ‘O’ Anusandhan University,Institute of Technical Education & Research
来源
Journal of Biosciences | 2015年 / 40卷
关键词
Biological functional enrichment; clustering; explorative data analysis; feature selection; gene selection; graph-based learning; microarray; multiview clustering;
D O I
暂无
中图分类号
学科分类号
摘要
A challenge in bioinformatics is to analyse volumes of gene expression data generated through microarray experiments and obtain useful information. Consequently, most microarray studies demand complex data analysis to infer biologically meaningful information from such high-throughput data. Selection of informative genes is an important data analysis step to identify a set of genes which can further help in finding the biological information embedded in microarray data, and thus assists in diagnosis, prognosis and treatment of the disease. In this article we present an unsupervised feature selection technique which attempts to address the goal of explorative data analysis, unfolding the multi-faceted nature of data. It focuses on extracting multiple clustering views considering the diversity of each view from high-dimensional data. We evaluated our technique on benchmark data sets and the experimental results indicates the potential and effectiveness of the proposed model in comparison to the traditional single view clustering models, as well as other existing methods used in the literature for the studied datasets.
引用
收藏
页码:755 / 767
页数:12
相关论文
共 102 条
[1]  
Berriz GF(2009)Next generation software for functional trend analysis Bioinformatics 25 3043-3044
[2]  
Beaver JE(2013)TW-(k)-means: automated two-level variable weighting clustering algorithm for multiview data IEEE Trans. Knowl. Data Eng. 25 932-944
[3]  
Cenik C(2011)Systems biology of interstitial lung diseases: integration of mrna and microrna expression changes BMC Med. Genet. 4 8-2649
[4]  
Tasan M(2012)Subnetwork-based analysis of chronic lymphocytic leukemia identifies pathways that associate with disease progression Blood 120 2639-222
[5]  
Roth FP(2009)Gene expression profiling in chronic lymphocytic leukaemia Best Pract. Res. Clin. Haematol. 22 211-32
[6]  
Chen X(2013)Interstitial lung disease Eur. Respir. Rev. 22 26-1954
[7]  
Xu X(2003)David: database for annotation, visualization, and integrated discovery Genome Biol. 4 P3-1266
[8]  
Huang J(2012)View generation for multiview maximum disagreement based active learning for hyperspectral image classification IEEE Trans. Geosci. Remote Sens. 50 1942-140
[9]  
Ye Y(2003)Unsupervised feature selection via two-way ordering in gene expression analysis Bioinformatics 19 1259-893
[10]  
Cho JH(2002)Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments Stat. Sin. 12 111-140