RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

被引:0
|
作者
Bo Li
Colin N Dewey
机构
[1] University of Wisconsin-Madison,Department of Computer Sciences
[2] University of Wisconsin-Madison,Department of Biostatistics and Medical Informatics
来源
关键词
Abundance Estimate; Count Vector; Fragment Length Distribution; Read Length Distribution; Transcript Fraction;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [41] MUREN: a robust and multi-reference approach of RNA-seq transcript normalization
    Feng, Yance
    Li, Lei M.
    BMC BIOINFORMATICS, 2021, 22 (01)
  • [42] MUREN: a robust and multi-reference approach of RNA-seq transcript normalization
    Yance Feng
    Lei M. Li
    BMC Bioinformatics, 22
  • [43] Characterizing and annotating the genome using RNA-seq data
    Chen, Geng
    Shi, Tieliu
    Shi, Leming
    SCIENCE CHINA-LIFE SCIENCES, 2017, 60 (02) : 116 - 125
  • [44] Characterizing and annotating the genome using RNA-seq data
    Geng Chen
    Tieliu Shi
    Leming Shi
    Science China Life Sciences, 2017, 60 : 116 - 125
  • [45] Proteomic Validation of Transcript Isoforms, Including Those Assembled from RNA-Seq Data
    Tay, Aidan P.
    Pang, Chi Nam Ignatius
    Twine, Natalie A.
    Hart-Smith, Gene
    Harkness, Linda
    Kassem, Moustapha
    Wilkins, Marc R.
    JOURNAL OF PROTEOME RESEARCH, 2015, 14 (09) : 3541 - 3554
  • [46] FCRF: An efficient algorithm for detecting circular fusion transcript from RNA-Seq data
    Yu, Han
    Zhang, Xuanping
    Guan, Yanfang
    Chen, Yongsheng
    Xiao, Xiao
    Wang, Jiayin
    CANCER RESEARCH, 2019, 79 (13)
  • [47] ESPRESSO: Robust discovery and quantification of transcript isoforms from error-prone long-read RNA-seq data
    Gao, Yuan
    Wang, Feng
    Wang, Robert
    Kutschera, Eric
    Xu, Yang
    Xie, Stephan
    Wang, Yuanyuan
    Kadash-Edmondson, Kathryn E.
    Lin, Lan
    Xing, Yi
    SCIENCE ADVANCES, 2023, 9 (03)
  • [48] Transcript length bias in RNA-seq data confounds systems biology
    Alicia Oshlack
    Matthew J Wakefield
    Biology Direct, 4
  • [49] Transcript length bias in RNA-seq data confounds systems biology
    Oshlack, Alicia
    Wakefield, Matthew J.
    BIOLOGY DIRECT, 2009, 4
  • [50] A novel robust statistical method for isoform quantification from RNA-seq data
    Mondal, Pronoy K.
    Chatterjee, Raghunath
    Mukhopadhyay, Indranil
    GENETIC EPIDEMIOLOGY, 2018, 42 (07) : 719 - 719