HiCdat: a fast and easy-to-use Hi-C data analysis tool

[1] Dekker J(2013)Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data Nat Rev Genet 14 390-403

[2] Marti-Renom MA(2010)A three-dimensional model of the yeast genome Nature 465 363-7

[3] Mirny LA(2012)Topological domains in mammalian genomes identified by analysis of chromatin interactions Nature 485 376-80

[4] Duan Z(2012)MORC family ATPases required for heterochromatin condensation and gene silencing Science 336 1448-51

[5] Andronescu M(2014)Hi-C analysis in Mol Cell 55 678-93

[6] Schutz K(2014) identifies the KNOT, a structure with similarities to the Mol Cell 55 694-707

[7] McIlwain S(2014) locus of Bioinformatics 30 2808-10

[8] Kim YJ(2012)Genome-wide Hi-C analyses in wild-type and mutants reveal high-resolution chromatin interactions in Bioinformatics 28 2843-4

[9] Lee C(2014)Sushi.r: flexible, quantitative and integrative genomic visualizations for publication-quality multi-panel figures Bioinformatics 30 386-92

[10] Dixon JR(2014)HiTC : exploration of high-throughput ‘C’ experiments Mol Biosyst 10 1576-85

[1] Dekker J(2013)Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data Nat Rev Genet 14 390-403

[2] Marti-Renom MA(2010)A three-dimensional model of the yeast genome Nature 465 363-7

[3] Mirny LA(2012)Topological domains in mammalian genomes identified by analysis of chromatin interactions Nature 485 376-80

[4] Duan Z(2012)MORC family ATPases required for heterochromatin condensation and gene silencing Science 336 1448-51

[5] Andronescu M(2014)Hi-C analysis in Mol Cell 55 678-93

[6] Schutz K(2014) identifies the KNOT, a structure with similarities to the Mol Cell 55 694-707

[7] McIlwain S(2014) locus of Bioinformatics 30 2808-10

[8] Kim YJ(2012)Genome-wide Hi-C analyses in wild-type and mutants reveal high-resolution chromatin interactions in Bioinformatics 28 2843-4

[9] Lee C(2014)Sushi.r: flexible, quantitative and integrative genomic visualizations for publication-quality multi-panel figures Bioinformatics 30 386-92

[10] Dixon JR(2014)HiTC : exploration of high-throughput ‘C’ experiments Mol Biosyst 10 1576-85