Improvement in accuracy of multiple sequence alignment using novel group-to-group sequence alignment algorithm with piecewise linear gap cost

[1] Gotoh O(1999)Multiple sequence alignment: algorithms and applications Adv Biophys 36 159-206

[2] Notredame C(2002)Recent progress in multiple sequence alignment: a survey Pharmacogenomics 3 131-144

[3] Grasso C(2004)Combining partial order alignment and progressive multiple sequence alignment increases alignment speed and scalability to very large alignment problems Bioinformatics 20 1546-1556

[4] Lee C(2000)T-Coffee: A novel method for fast and accurate multiple sequence alignment J Mol Biol 302 205-217

[5] Notredame C(1994)CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res 22 4673-4680

[6] Higgins DG(2004)MUSCLE: multiple sequence alignment with high accuracy and high throughput Nucleic Acids Res 32 1792-1797

[7] Heringa J(1996)Significant improvement in accuracy of multiple protein sequence alignments by iterative refinement as assessed by reference to structural alignments J Mol Biol 264 823-838

[8] Thompson JD(2002)MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform Nucleic Acids Res 30 3059-3066

[9] Higgins DG(1993)Optimal alignment between groups of sequences and its application to multiple sequence alignment Comput Appl Biosci 9 361-370

[10] Gibson TJ(1994)Comparative analysis of multiple protein-sequence alignment methods Mol Biol Evol 11 571-592

[1] Gotoh O(1999)Multiple sequence alignment: algorithms and applications Adv Biophys 36 159-206

[2] Notredame C(2002)Recent progress in multiple sequence alignment: a survey Pharmacogenomics 3 131-144

[3] Grasso C(2004)Combining partial order alignment and progressive multiple sequence alignment increases alignment speed and scalability to very large alignment problems Bioinformatics 20 1546-1556

[4] Lee C(2000)T-Coffee: A novel method for fast and accurate multiple sequence alignment J Mol Biol 302 205-217

[5] Notredame C(1994)CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res 22 4673-4680

[6] Higgins DG(2004)MUSCLE: multiple sequence alignment with high accuracy and high throughput Nucleic Acids Res 32 1792-1797

[7] Heringa J(1996)Significant improvement in accuracy of multiple protein sequence alignments by iterative refinement as assessed by reference to structural alignments J Mol Biol 264 823-838

[8] Thompson JD(2002)MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform Nucleic Acids Res 30 3059-3066

[9] Higgins DG(1993)Optimal alignment between groups of sequences and its application to multiple sequence alignment Comput Appl Biosci 9 361-370

[10] Gibson TJ(1994)Comparative analysis of multiple protein-sequence alignment methods Mol Biol Evol 11 571-592