ParticleCall: A particle filter for base calling in next-generation sequencing systems

被引:0
作者
Xiaohu Shen
Haris Vikalo
机构
[1] University of Texas at Austin,Department of Electrical and Computer Engineering
[2] 1 University Station C0803,undefined
来源
BMC Bioinformatics | / 13卷
关键词
Hide Markov Model; Particle Filter; Hide Markov Model Model; Parameter Estimation Scheme; MCEM Algorithm;
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[1]  
Shendure J(2008)Next-generation DNA sequencing Nat Biotechnology 26 1135-undefined
[2]  
Ji H(2005)Emerging technologies in DNA sequencing Genome Research 56 1767-undefined
[3]  
Metzker M(2006)Whole-genome re-sequencing Curr Opin Genet Dev 16 545-undefined
[4]  
Bentley D(2011)Genotype and SNP calling from next-generation sequencing data Nature Reviews 12 443-undefined
[5]  
Nielsen R(2011)Base-calling for next-generation sequencing platforms Briefings in Bioinformatics 12 489-undefined
[6]  
Paul JS(2008)Probabilistic base calling of solexa sequencing data BMC Bioinformatics 9 431-undefined
[7]  
Alvrechtsen A(2008)Alta-Cyclic: a self-optimizing base caller for next-generation sequencing Nat Methods 5 679-undefined
[8]  
Song YS(2009)BayesCall: A model-based base-calling algorithm for high-throughput short-read sequencing Genome Research 19 1884-undefined
[9]  
Ledergerber C(2011)naiveBayesCall: an efficient model-based base-calling algorithm for high-throughput sequencing Journal of Computational Biology 18 365-undefined
[10]  
Dessimoz C(2006)BTA, a novel reagent for DNA attachment on glass and efficient generation of solid-phase amplified DNA colonies Nucleic Acids Res 34 e22-undefined