Enzyme dynamics and catalysis in the mechanism of DNA polymerase

被引:0
|
作者
Adrian J. Mulholland
Adrian E. Roitberg
Iñaki Tuñón
机构
[1] University of Bristol,Centre for Computational Chemistry, School of Chemistry
[2] University of Florida,Department of Chemistry and Quantum Theory Project
[3] Universidad de Valencia,Departamento de Química Física
来源
关键词
Enzyme dynamics; Enzymatic catalysis; Dynamical effects; DNA polymerase;
D O I
暂无
中图分类号
学科分类号
摘要
This contribution contains the commentaries of the three authors about two papers in this issue of TCA that present alternative views of the role of conformational changes in the specificity of enzyme DNA polymerase β. Concepts such as dynamical effects, the induced fit model or the importance of sampling in modeling of enzymatic reactions are briefly revised within the context of the debate established in the two previous papers.
引用
收藏
相关论文
共 50 条
  • [1] Enzyme dynamics and catalysis in the mechanism of DNA polymerase
    Mulholland, Adrian J.
    Roitberg, Adrian E.
    Tunon, Inaki
    THEORETICAL CHEMISTRY ACCOUNTS, 2012, 131 (12)
  • [2] DNA polymerase beta: Multiple conformational changes in the mechanism of catalysis
    Zhong, XJ
    Patel, SS
    Werneburg, BG
    Tsai, MD
    BIOCHEMISTRY, 1997, 36 (39) : 11891 - 11900
  • [3] Metal Dynamics in X-Family DNA Polymerase Catalysis
    Jaemsen, J. A.
    Beard, W. A.
    Shock, D. D.
    Pedersen, L. C.
    Bebenek, K.
    Kunkel, T. A.
    Wilson, S. H.
    ENVIRONMENTAL AND MOLECULAR MUTAGENESIS, 2017, 58 : S75 - S75
  • [4] DNA replication dynamics: cooperative catalysis by the helicase-primase and the DNA polymerase
    Patel, Smita S.
    Pandey, Manjula
    Ha, Taekjip
    Syed, Salman
    FASEB JOURNAL, 2011, 25
  • [5] Kinetic Mechanism of Active Site Assembly and Chemical Catalysis of DNA Polymerase β
    Balbo, Paul B.
    Wang, Eric Chun-Wei
    Tsai, Ming-Daw
    BIOCHEMISTRY, 2011, 50 (45) : 9865 - 9875
  • [6] Conformational Dynamics of Thermus aquaticus DNA Polymerase I during Catalysis
    Xu, Cuiling
    Maxwell, Brian A.
    Suo, Zucai
    JOURNAL OF MOLECULAR BIOLOGY, 2014, 426 (16) : 2901 - 2917
  • [7] MECHANISM OF ENZYME CATALYSIS
    HAMMES, GG
    NATURE, 1964, 204 (495) : 342 - &
  • [8] Global Conformational Dynamics of a Y-Family DNA Polymerase during Catalysis
    Xu, Cuiling
    Maxwell, Brian A.
    Brown, Jessica A.
    Zhang, Likui
    Suo, Zucai
    PLOS BIOLOGY, 2009, 7 (10)
  • [9] Global conformational dynamics of a Y-Family DNA polymerase during catalysis
    Xu, Cuiling
    Maxwell, Brian A.
    Brown, Jessica A.
    Zhang, Likui
    Suo, Zucai
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2011, 242
  • [10] Molecular Dynamics Study of the Opening Mechanism for DNA Polymerase I
    Miller, Bill R., III
    Parish, Carol A.
    Wu, Eugene Y.
    PLOS COMPUTATIONAL BIOLOGY, 2014, 10 (12)