CLUSS: Clustering of protein sequences based on a new similarity measure

[1] Altschul SF(1990)Basic local alignment search tool J Mol Bio 215 403-410

[2] Gish W(1997)Gapped BLAST and PSI-BLAST: A new generation of protein database search programs Nucl Acids Res 25 3389-3402

[3] Miller W(2000)The SYSTERS protein sequence cluster set Nucl Acids Res 28 270-272

[4] Myers EW(2002)ProClust: Improved clustering of protein sequences with an extended graph-based approach Bioinformatics 18 S182-S191

[5] Lipman DJ(2000)ProtoMap: Automatic classification of protein sequences and hierarchy of protein families Nucl Acids Res 28 49-55

[6] Altschul SF(2004)Phylogenomic inference of protein molecular function: Advances and challenges Bioinformatics 20 170-179

[7] Madden TL(2002)An efficient algorithm for large-scale detection of protein families Nucl Acids Res 30 1575-1584

[8] Schaffer AA(2005)Super Paramagnetic Clustering of Protein Sequences BMC Bioinformatics 6 82-174

[9] Zhang J(1998)Phylogenetic inference in protein superfamilies: Analysis of SH2 domains Intell Syst Mol Biol 6 165-1441

[10] Zhang Z(2001)Secator: A Program for Inferring Protein Subfamilies from Phylogenetic Trees Mol Biol Evol 18 1435-788

[1] Altschul SF(1990)Basic local alignment search tool J Mol Bio 215 403-410

[2] Gish W(1997)Gapped BLAST and PSI-BLAST: A new generation of protein database search programs Nucl Acids Res 25 3389-3402

[3] Miller W(2000)The SYSTERS protein sequence cluster set Nucl Acids Res 28 270-272

[4] Myers EW(2002)ProClust: Improved clustering of protein sequences with an extended graph-based approach Bioinformatics 18 S182-S191

[5] Lipman DJ(2000)ProtoMap: Automatic classification of protein sequences and hierarchy of protein families Nucl Acids Res 28 49-55

[6] Altschul SF(2004)Phylogenomic inference of protein molecular function: Advances and challenges Bioinformatics 20 170-179

[7] Madden TL(2002)An efficient algorithm for large-scale detection of protein families Nucl Acids Res 30 1575-1584

[8] Schaffer AA(2005)Super Paramagnetic Clustering of Protein Sequences BMC Bioinformatics 6 82-174

[9] Zhang J(1998)Phylogenetic inference in protein superfamilies: Analysis of SH2 domains Intell Syst Mol Biol 6 165-1441

[10] Zhang Z(2001)Secator: A Program for Inferring Protein Subfamilies from Phylogenetic Trees Mol Biol Evol 18 1435-788