Analyses and interpretation of whole-genome gene expression from formalin-fixed paraffin-embedded tissue: an illustration with breast cancer tissues

Masuda N(1999)Analysis of chemical modification of RNA from formalin-fixed samples and optimization of molecular biology applications for such samples Nucleic Acids Res 27 4436-4443

Ohnishi T(2002)Effect of fixatives and tissue processing on the content and integrity of nucleic acids Am J Pathol 161 1961-1971

Kawamoto S(2000)Quantitative mRNA expression analysis from formalin-fixed, paraffin-embedded tissues using 5' nuclease quantitative reverse transcription-polymerase chain reaction J Mol Diagn 2 84-91

Monden M(2009)Whole-genome gene expression profiling of formalin-fixed, paraffin-embedded tissue samples PLoS One 4 e8162-1807

Okubo K(2004)Quantitative gene expression profiling in formalin-fixed, paraffin-embedded tissues using universal bead arrays Am J Pathol 165 1799-2386

Srinivasan M(2004)Gene expression profiles in formalin-fixed, paraffin-embedded tissues obtained with a novel assay for microarray analysis Clin Chem 50 2384-270

Sedmak D(2006)Analysis of a multifactor microarray study using Partek genomics solution Methods Enzymol 411 256-22

Jewell S(1947)The assumptions underlying the analysis of variance Biometrics 3 1-15550

Godfrey TE(2005)Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles Proc Natl Acad Sci USA 102 15545-4271

Kim SH(2002)Pre-validation and inference in microarrays Stat Appl Genet Mol Biol 1 Article1-699

Masuda N(1999)Analysis of chemical modification of RNA from formalin-fixed samples and optimization of molecular biology applications for such samples Nucleic Acids Res 27 4436-4443

Ohnishi T(2002)Effect of fixatives and tissue processing on the content and integrity of nucleic acids Am J Pathol 161 1961-1971

Kawamoto S(2000)Quantitative mRNA expression analysis from formalin-fixed, paraffin-embedded tissues using 5' nuclease quantitative reverse transcription-polymerase chain reaction J Mol Diagn 2 84-91

Monden M(2009)Whole-genome gene expression profiling of formalin-fixed, paraffin-embedded tissue samples PLoS One 4 e8162-1807

Okubo K(2004)Quantitative gene expression profiling in formalin-fixed, paraffin-embedded tissues using universal bead arrays Am J Pathol 165 1799-2386

Srinivasan M(2004)Gene expression profiles in formalin-fixed, paraffin-embedded tissues obtained with a novel assay for microarray analysis Clin Chem 50 2384-270

Sedmak D(2006)Analysis of a multifactor microarray study using Partek genomics solution Methods Enzymol 411 256-22

Jewell S(1947)The assumptions underlying the analysis of variance Biometrics 3 1-15550

Godfrey TE(2005)Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles Proc Natl Acad Sci USA 102 15545-4271

Kim SH(2002)Pre-validation and inference in microarrays Stat Appl Genet Mol Biol 1 Article1-699