Genome-wide profiling of in vivo RNA structure at single-nucleotide resolution using structure-seq

被引：0
|
作者：
Yiliang Ding
Chun Kit Kwok
Yin Tang
Philip C Bevilacqua
Sarah M Assmann
机构：
[1] Pennsylvania State University,Department of Biology
[2] University Park,Department of Chemistry
[3] Pennsylvania State University,undefined
[4] University Park,undefined
[5] Center for RNA Molecular Biology,undefined
[6] Pennsylvania State University,undefined
[7] University Park,undefined
[8] Bioinformatics and Genomics Graduate Program,undefined
[9] Pennsylvania State University,undefined
[10] University Park,undefined
[11] Plant Biology Graduate Program,undefined
[12] Pennsylvania State University,undefined
[13] University Park,undefined
[14] Present address: Department of Cell and Developmental Biology,undefined
[15] John Innes Centre,undefined
[16] Norwich Research Park,undefined
[17] Norwich,undefined
[18] UK.,undefined
[19] Present address: Department of Chemistry,undefined
[20] University of Cambridge,undefined
[21] Lensfield Road,undefined
[22] Cambridge,undefined
[23] UK.,undefined
来源：
Nature Protocols | 2015年 / 10卷
关键词：
D O I：
暂无
中图分类号：
学科分类号：
摘要：
Structure-seq applies chemically based RNA structure probing on a genome-wide scale, allowing the in vivo structures of thousands of distinct transcripts to be discerned, and the meta-properties of RNA structure–function relationships to be unveiled.
引用
收藏
页码：1050 / 1066
页数：16
相关论文
共 50 条
  • [21] Genome-wide single-nucleotide polymorphism map for Candida albicans
    Forche, A
    Magee, PT
    Magee, BB
    May, G
    EUKARYOTIC CELL, 2004, 3 (03) : 705 - 714
  • [22] Genome-wide identification of Bacillus subtilis CodY-binding sites at single-nucleotide resolution
    Belitsky, Boris R.
    Sonenshein, Abraham L.
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2013, 110 (17) : 7026 - 7031
  • [23] A Transcriptome Map of Actinobacillus pleuropneumoniae at Single-Nucleotide Resolution Using Deep RNA-Seq
    Su, Zhipeng
    Zhu, Jiawen
    Xu, Zhuofei
    Xiao, Ran
    Zhou, Rui
    Li, Lu
    Chen, Huanchun
    PLOS ONE, 2016, 11 (03):
  • [24] Revealing RNA structure-function relationships in vivo and genome-wide
    Bevilacqua, Philip
    Su, Zhao
    Ritchey, Laura
    Tang, Yin
    Assmann, Sarah
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2016, 251
  • [25] StructureFold: genome-wide RNA secondary structure mapping and reconstruction in vivo
    Tang, Yin
    Bouvier, Emil
    Kwok, Chun Kit
    Ding, Yiliang
    Nekrutenko, Anton
    Bevilacqua, Philip C.
    Assmann, Sarah M.
    BIOINFORMATICS, 2015, 31 (16) : 2668 - 2675
  • [26] Genome-wide linkage analysis of 972 bipolar pedigrees using single-nucleotide polymorphisms
    Badner, J. A.
    Koller, D.
    Foroud, T.
    Edenberg, H.
    Nurnberger, J. I., Jr.
    Zandi, P. P.
    Willour, V. L.
    McMahon, F. J.
    Potash, J. B.
    Hamshere, M.
    Grozeva, D.
    Green, E.
    Kirov, G.
    Jones, I.
    Jones, L.
    Craddock, N.
    Morris, D.
    Segurado, R.
    Gill, M.
    Sadovnick, D.
    Remick, R.
    Keck, P.
    Kelsoe, J.
    Ayub, M.
    MacLean, A.
    Blackwood, D.
    Liu, C-Y
    Gershon, E. S.
    McMahon, W.
    Lyon, G. J.
    Robinson, R.
    Ross, J.
    Byerley, W.
    MOLECULAR PSYCHIATRY, 2012, 17 (08) : 818 - 826
  • [27] Genome-wide linkage analysis of 972 bipolar pedigrees using single-nucleotide polymorphisms
    J A Badner
    D Koller
    T Foroud
    H Edenberg
    J I Nurnberger
    P P Zandi
    V L Willour
    F J McMahon
    J B Potash
    M Hamshere
    D Grozeva
    E Green
    G Kirov
    I Jones
    L Jones
    N Craddock
    D Morris
    R Segurado
    M Gill
    D Sadovnick
    R Remick
    P Keck
    J Kelsoe
    M Ayub
    A MacLean
    D Blackwood
    C-Y Liu
    E S Gershon
    W McMahon
    G J Lyon
    R Robinson
    J Ross
    W Byerley
    Molecular Psychiatry, 2012, 17 : 818 - 826
  • [28] Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq
    Lu, Tingting
    Lu, Guojun
    Fan, Danlin
    Zhu, Chuanrang
    Li, Wei
    Zhao, Qiang
    Feng, Qi
    Zhao, Yan
    Guo, Yunli
    Li, Wenjun
    Huang, Xuehui
    Han, Bin
    GENOME RESEARCH, 2010, 20 (09) : 1238 - 1249
  • [29] CRISPR-Mediated Profiling of Viral RNA at Single-Nucleotide Resolution
    Chen, Duo
    Huang, Wanting
    Zhang, Yun
    Chen, Bo
    Tan, Jie
    Yuan, Quan
    Yang, Yanbing
    ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2023, 62 (30)
  • [30] Genome-wide single-nucleotide polymorphism studies in rheumatology: Hype or hope?
    Mil, Annette H. M. van der Helm-van
    Padyukov, Leonid
    Toes, Rene. M.
    Klareskog, Lars
    Huizinga, Tom W. J.
    ARTHRITIS AND RHEUMATISM, 2008, 58 (09): : 2591 - 2597
12345