Comprehensive benchmarking and ensemble approaches for metagenomic classifiers

被引：0
|
作者：
Alexa B. R. McIntyre
Rachid Ounit
Ebrahim Afshinnekoo
Robert J. Prill
Elizabeth Hénaff
Noah Alexander
Samuel S. Minot
David Danko
Jonathan Foox
Sofia Ahsanuddin
Scott Tighe
Nur A. Hasan
Poorani Subramanian
Kelly Moffat
Shawn Levy
Stefano Lonardi
Nick Greenfield
Rita R. Colwell
Gail L. Rosen
Christopher E. Mason
机构：
[1] Tri-Institutional Program in Computational Biology and Medicine,Department of Physiology and Biophysics
[2] Weill Cornell Medicine,Department of Computer Science and Engineering
[3] The HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine,School of Medicine
[4] University of California,Department of Electrical and Computer Engineering
[5] New York Medical College,undefined
[6] Accelerated Discovery Lab,undefined
[7] IBM Almaden Research Center,undefined
[8] One Codex,undefined
[9] Reference Genomics,undefined
[10] University of Vermont,undefined
[11] CosmosID,undefined
[12] Inc,undefined
[13] Center for Bioinformatics and Computational Biology,undefined
[14] University of Maryland Institute for Advanced Computer Studies (UMIACS),undefined
[15] HudsonAlpha Institute for Biotechnology,undefined
[16] Johns Hopkins University Bloomberg School of Public Health,undefined
[17] Drexel University,undefined
[18] The Feil Family Brain and Mind Research Institute,undefined
来源：
Genome Biology | / 18卷
关键词：
Metagenomics; Shotgun sequencing; Taxonomy; Classification; Comparison; Ensemble methods; Meta-classification; Pathogen detection;
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