A comprehensive database of high-throughput sequencing-based RNA secondary structure probing data (Structure Surfer)

被引：0
|
作者：
Nathan D. Berkowitz
Ian M. Silverman
Daniel M. Childress
Hilal Kazan
Li-San Wang
Brian D. Gregory
机构：
[1] University of Pennsylvania,Department of Biology
[2] Genomics and Computational Biology Graduate Group,Department of Pathology and Laboratory Medicine, Perelman School of Medicine
[3] Cell and Molecular Biology Graduate Group,Department of Computer Engineering
[4] University of Pennsylvania,Penn Center for Bioinformatics, Perelman School of Medicine
[5] Antalya International University,undefined
[6] Institute on Aging,undefined
[7] University of Pennsylvania,undefined
来源：
BMC Bioinformatics | / 17卷
关键词：
HEK293T Cell; Structural Trend; Control Library; Structure Score; Unpaired Region;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [1] A comprehensive database of high-throughput sequencing-based RNA secondary structure probing data (Structure Surfer)
    Berkowitz, Nathan D.
    Silverman, Ian M.
    Childress, Daniel M.
    Kazan, Hilal
    Wang, Li-San
    Gregory, Brian D.
    BMC BIOINFORMATICS, 2016, 17
  • [2] ProbeAlign: incorporating high-throughput sequencing-based structure probing information into ncRNA homology search
    Ping Ge
    Cuncong Zhong
    Shaojie Zhang
    BMC Bioinformatics, 15
  • [3] ProbeAlign: incorporating high-throughput sequencing-based structure probing information into ncRNA homology search
    Ge, Ping
    Zhong, Cuncong
    Zhang, Shaojie
    BMC BIOINFORMATICS, 2014, 15
  • [4] RNAex: an RNA secondary structure prediction server enhanced by high-throughput structure-probing data
    Wu, Yang
    Qu, Rihao
    Huang, Yiming
    Shi, Binbin
    Liu, Mengrong
    Li, Yang
    Lu, Zhi John
    NUCLEIC ACIDS RESEARCH, 2016, 44 (W1) : W294 - W301
  • [5] Mod-seq: high-throughput sequencing for chemical probing of RNA structure
    Talkish, Jason
    May, Gemma
    Lin, Yizhu
    Woolford, John L., Jr.
    McManus, C. Joel
    RNA, 2014, 20 (05) : 713 - 720
  • [6] Mod-seq: A High-Throughput Method for Probing RNA Secondary Structure
    Lin, Yizhu
    May, Gemma E.
    McManus, C. Joel
    STRUCTURES OF LARGE RNA MOLECULES AND THEIR COMPLEXES, 2015, 558 : 125 - 152
  • [7] RNA structure framework: automated transcriptome-wide reconstruction of RNA secondary structures from high-throughput structure probing data
    Incarnato, Danny
    Neri, Francesco
    Anselmi, Francesca
    Oliviero, Salvatore
    BIOINFORMATICS, 2016, 32 (03) : 459 - 461
  • [8] FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing
    Jason G Underwood
    Andrew V Uzilov
    Sol Katzman
    Courtney S Onodera
    Jacob E Mainzer
    David H Mathews
    Todd M Lowe
    Sofie R Salama
    David Haussler
    Nature Methods, 2010, 7 : 995 - 1001
  • [9] FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing
    Underwood, Jason G.
    Uzilov, Andrew V.
    Katzman, Sol
    Onodera, Courtney S.
    Mainzer, Jacob E.
    Mathews, David H.
    Lowe, Todd M.
    Salama, Sofie R.
    Haussler, David
    NATURE METHODS, 2010, 7 (12) : 995 - U81
  • [10] SeqFold: Genome-scale reconstruction of RNA secondary structure integrating high-throughput sequencing data
    Ouyang, Zhengqing
    Snyder, Michael P.
    Chang, Howard Y.
    GENOME RESEARCH, 2013, 23 (02) : 377 - 387
12345